Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K17
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41092| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    33   0.27 

>SB_41092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 32/96 (33%), Positives = 41/96 (42%)
 Frame = +1

Query: 46  PGINIDHIVKERYPTFVXXXXXXXXXXXXXXXXSTFPSLKKVPRDQSLLCRRLTVEFMHA 225
           P   +DHIVKERYPTF+                S  P   K+                  
Sbjct: 78  PVYTLDHIVKERYPTFIDALRDLDDALSMLFLFSIMPQTDKI------------------ 119

Query: 226 VIAAKALRKVFVSVKGFYYQVELEGQTITWIVPHHF 333
                   +VF S+KG Y+Q E++GQTITWI P+ F
Sbjct: 120 --------QVFFSIKGIYFQAEIQGQTITWITPYQF 147


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 352  KDEVDFKIMSTFVEFYTMMLGFVNFKLYHSLNIVYPPKLPAGFSVD 489
            + E DFK  +TF    + ++GF  +KL+ S+N     KLP    +D
Sbjct: 1389 ESEDDFKPKATFPIHRSRIIGFKRYKLFRSINTYTHAKLPKAPKLD 1434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,298,859
Number of Sequences: 59808
Number of extensions: 341617
Number of successful extensions: 3012
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3011
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)