Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K17
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14520.1 68418.m01702 pescadillo-related similar to pescadill...   129   1e-30
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot...    29   3.5  
At2g34780.1 68415.m04270 expressed protein                             28   4.7  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    28   6.2  

>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
           [Zebrafish, Danio rerio] SWISS-PROT:P79741
          Length = 590

 Score =  129 bits (312), Expect = 1e-30
 Identities = 64/150 (42%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
 Frame = +1

Query: 25  RKFLRDYPGINIDHIVKERYPTFVXXXXXXXXXXXXXXXXSTFPSLKKVPRDQSLL--CR 198
           R  L   P   +D +++ERYPTF+                +  P+  +   +   +  CR
Sbjct: 102 RLLLTRQPTYKLDRLIRERYPTFIDALRDLDDCLTMVHLFAVLPASDRENLEVKRVHNCR 161

Query: 199 RLTVEFMHAVIAAKALRKVFVSVKGFYYQVELEGQTITWIVPHHFSFQPQTKDEVDFKIM 378
           RLT E+   +  + ALRKVFVSVKG YYQ E+EGQ ITW+ PH  + Q    ++VDF ++
Sbjct: 162 RLTHEWQAYISRSHALRKVFVSVKGIYYQAEIEGQKITWLTPH--AIQQVFTNDVDFGVL 219

Query: 379 STFVEFYTMMLGFVNFKLYHSLNIVYPPKL 468
            TF+EFY  +L F+NFKLYHSLN+ YPP L
Sbjct: 220 LTFLEFYETLLAFINFKLYHSLNVKYPPIL 249


>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
            similar to DNA helicase HEL308 [Homo sapiens]
            GI:19110782; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00476: DNA polymerase family A
          Length = 1548

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 254  TFRNAFAAITACINSTVNLLQRRDWSRGTFFSDGKVLN 141
            +F+++F A+T+ +N T++  Q + W     F    VLN
Sbjct: 1378 SFKSSFPAVTSWLNETISFCQEKGWGCYRLFPLLFVLN 1415


>At2g34780.1 68415.m04270 expressed protein
          Length = 1297

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 157 MERC*IRSKE*GSHPSLLKHLQKWDIFLLQYDQCLFLGNHVKTFASVH 14
           ++RC   +KE  + P++L  L+  +  L Q   C+FL   +  F+ VH
Sbjct: 841 LQRCPSVTKEQWAVPAILSSLKMEENLLAQERACVFLSLLLHNFSMVH 888


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
           binding domain-containing protein contains Pfam profiles
           PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
           binding domain
          Length = 2176

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 385 FVEFYTMMLGFVNFKL-YHSLNIVYP 459
           F +F+ + LG ++ +  YH++N++YP
Sbjct: 408 FEDFFVLSLGRIDIRQSYHNVNVIYP 433


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,978,599
Number of Sequences: 28952
Number of extensions: 243592
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)