Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K16
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    29   0.27 
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   3.4  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   4.4  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    24   7.8  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 261 LSFSQ*NSHGFSYVLPSDPQTGL*IFPQIHNGGGRAVT 148
           L++ Q +++G SYVL +DP      F +  NG  R  T
Sbjct: 289 LAYEQADANGISYVLATDPDADRFAFAEKINGAWRRFT 326


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = +1

Query: 277 DNREKHRMRGGHPLLLY-------LGICP 342
           DNR+   +R G P++LY       +G+CP
Sbjct: 697 DNRQVFMVRNGEPMILYPEESAYEMGLCP 725


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 262 DTQQYDNREKHRMRGGHPLL 321
           D   Y NR   +MRG  PLL
Sbjct: 94  DNPYYKNRPPQKMRGNKPLL 113


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 185 FRKYITAVAELLPSILAQRRSEEYR 111
           F KY  A+  LL ++L Q   +E+R
Sbjct: 531 FEKYFDAIMPLLFNVLQQADGKEFR 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,910
Number of Sequences: 5004
Number of extensions: 28493
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)