Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K16
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0379 + 43177978-43178572,43178643-43178674 34 0.035
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 29 1.3
12_01_0415 + 3292576-3293727 27 3.1
10_08_1018 + 22298098-22298691 27 3.1
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 27 5.3
02_02_0447 + 10363077-10363245,10363419-10363519,10363947-103641... 27 5.3
08_02_0799 - 21317728-21317895,21318018-21318146,21318396-213184... 26 7.1
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979 26 7.1
07_03_1129 + 24184785-24185561 26 9.3
05_04_0107 - 18039942-18040123,18040228-18040474 26 9.3
02_01_0670 - 4976658-4978037,4978128-4979015,4982590-4983130,498... 26 9.3
>01_07_0379 + 43177978-43178572,43178643-43178674
Length = 208
Score = 33.9 bits (74), Expect = 0.035
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 281 LSYCCVSCPFRSKIH-TGSRTSYHLTRRRDYRFFRKYITA 165
L Y C C FR+ T S+T +HL R +YR++ Y+ A
Sbjct: 157 LFYSCACCAFRNTATATSSKTIFHLHPRWEYRWYLLYLCA 196
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 218 YHLTRRRDYRFFRKYITAVAELLPSIL 138
YHL R DY ++R+++ V ELL + L
Sbjct: 864 YHLLRLYDYFYYREHLLIVCELLKANL 890
>12_01_0415 + 3292576-3293727
Length = 383
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 168 GGGRAVTEYISAAAIRRIPSLFILC 94
GGG E +S A IRR+ FILC
Sbjct: 38 GGGGGGEEILSVAWIRRLLEAFILC 62
>10_08_1018 + 22298098-22298691
Length = 197
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 318 QGMPTSHPVFFTIVILLCVLS 256
Q PT PVF V+LLC LS
Sbjct: 28 QSFPTLLPVFILFVLLLCFLS 48
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 337 IFQGTVAGDAHLASGVFHDCH 275
IF+GT GD GV DCH
Sbjct: 557 IFKGTKGGDLSEDEGVVKDCH 577
>02_02_0447 +
10363077-10363245,10363419-10363519,10363947-10364140,
10364223-10364634
Length = 291
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -3
Query: 170 TAVAELLPSILAQRRS--EEYRVYSFCV 93
++V +L S LA+ R +EYR+Y++CV
Sbjct: 247 SSVCQLSDSELARMRKVQDEYRIYNYCV 274
>08_02_0799 -
21317728-21317895,21318018-21318146,21318396-21318457,
21318519-21318534,21318590-21318694,21318993-21319133,
21319338-21319412,21319510-21319611,21319697-21319792,
21320340-21320451,21320642-21320715,21321016-21321097,
21321201-21321508
Length = 489
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 165 GGRAVTEYISAAAIRRIPSLFILCLNINGTNLEFQS*HGNCWSVKKK 25
GG +E + + RRI LF+ L NGT+ + H C K K
Sbjct: 246 GGAKTSEIVDSIQARRIDMLFV--LGGNGTHAGANAIHEECRKRKLK 290
>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
Length = 158
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -3
Query: 305 PRIRCFSRLSYCCVSCPFRSKIHTGSRTSYHLTRRRD 195
P + + RL CC++ S + G H +RRD
Sbjct: 61 PPLHLYQRLPKCCITSHRCSTLRAGYPADLHGQKRRD 97
>07_03_1129 + 24184785-24185561
Length = 258
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -3
Query: 332 PRYSSRGCPPRIRCFSRLSYCCVSCPFRSKIHTGSRTSYHLTR 204
PR S R CF LS SC RS+ S + HL R
Sbjct: 52 PRQGSTTWSSRSTCFLALSIADRSCSNRSRNTAHSSRAQHLER 94
>05_04_0107 - 18039942-18040123,18040228-18040474
Length = 142
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = +2
Query: 224 YENPCEFYCEKDKTHSNMTIVKNTGCEVGIPCY 322
Y PC F+C+K + G + PCY
Sbjct: 97 YRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCY 129
>02_01_0670 -
4976658-4978037,4978128-4979015,4982590-4983130,
4983209-4983845,4983962-4983992,4984094-4984324
Length = 1235
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 93 LNINGTNLEFQS*HGNCWSVKKKKKNSRL 7
+N+N NL F + G CW+ +++ SR+
Sbjct: 75 VNMNARNLLFLAAEGYCWTRTAERQASRM 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,863,796
Number of Sequences: 37544
Number of extensions: 199152
Number of successful extensions: 555
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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