Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K16
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              33   7e-04
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   5.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   5.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 33.5 bits (73), Expect = 7e-04
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 179 CGKIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKN 292
           C + + PVC S+GK Y N CE +  +   HS  ++ K+
Sbjct: 110 CPRRHRPVCASNGKIYANHCELH--RAACHSGSSLTKS 145


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 179 CGKIYSPVCGSDGKTYENPCEFYCEKDKT 265
           C   Y      DG +Y N  E  C +D++
Sbjct: 230 CHSRYEDSRHEDGNSYRNDGERSCSRDRS 258


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 182 RKYITAVAELLPSILAQRRSEEYRVYSFCV 93
           RK  T    ++ S   Q++SEE  +   CV
Sbjct: 795 RKTATTTQPVISSRKEQKKSEEKNINDHCV 824


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 168 GGGRAVTEYISAAAIRRIPSLFILCLNINGTNLEF 64
           G G  V  ++S  ++R   +LF++ L I+   + F
Sbjct: 69  GNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMF 103


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 165 RRYVFAEKSIVPSAGQM 215
           RR +FA + ++ SAG +
Sbjct: 308 RRIIFARREVILSAGSV 324


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 168 GGGRAVTEYISAAAIRRIPSLFILCLNIN 82
           G G  V  ++S  ++R   +LF++ L I+
Sbjct: 35  GNGMVVYIFLSTKSLRTPSNLFVINLAIS 63


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 314 PCYCTLE 334
           PCYCT E
Sbjct: 1   PCYCTCE 7


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 97  QNE*TRYSSDRRCA 138
           Q+  +RYS +RRC+
Sbjct: 225 QHTSSRYSRERRCS 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,313
Number of Sequences: 438
Number of extensions: 1922
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)