Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K15
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    29   0.85 
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   4.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   6.0  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   7.9  

>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 9/23 (39%), Positives = 20/23 (86%)
 Frame = +2

Query: 569 RNEIDTITSKINFIINYNTIIVT 637
           +++I+T+T +INF+I+ N++ +T
Sbjct: 43  KDQIETLTQEINFLIDLNSVHIT 65


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 225 VHKWKNFLTQLTNK*SLFHLWINIY 151
           +HK KNF   L++K     LW++++
Sbjct: 289 LHKCKNFSNDLSDKYQNIRLWVSVW 313


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 114 NDYNYLLFELYIH-IYLSIDEIVTICLLVV 200
           N  +Y L +L +  I+LSIDEI  IC+ ++
Sbjct: 114 NAKSYCLVDLRMRAIFLSIDEISMICIRIL 143


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 569 RNEIDTITSKINFIINYNTIIVTYLNEIQNSGYFNIFMD 685
           RN I+ + + +  I+     + TYLN+  +S + + + D
Sbjct: 265 RNRINELNNSLGEIVKQQDTLTTYLNDYFDSVFVHRYRD 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,745
Number of Sequences: 5004
Number of extensions: 45423
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)