Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K15
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046)          29   4.8  
SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 28   6.3  

>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1167

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 210 NFLTQLTNK*SLFHLWINIYVCIVRTINNYNHSIVYISASVLFYISL 70
           N +T+L +   L    +N+Y C    +NNY  S   ++AS  FY SL
Sbjct: 805 NAITELVSDKELSGDTVNLYTCF---LNNYYASTRTVTASTYFYPSL 848


>SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046)
          Length = 240

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 78  YKIIHLH*YKQLNDYNYLLFELYIHIYLSI 167
           Y+ +H+H Y     Y+YL   L+IH Y+SI
Sbjct: 153 YQRLHIHDYISTTPYSYL--RLHIHDYISI 180


>SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 686

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 288 LHYSTFMYTILYL*GFFFIFTVI-ILGSNNLFYSHFWQSKCY 410
           L ++T +Y  + +  F  I +V+ ILG    FY H WQ+  Y
Sbjct: 114 LKFNTAVYIAVSIWLFGIIVSVLPILGGIEYFYDHSWQAGFY 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,100
Number of Sequences: 59808
Number of extensions: 270834
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)