Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K14
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 45 5e-05
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.008
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 31 1.2
10_08_0009 + 14075929-14076789 30 1.6
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 30 1.6
03_02_0517 + 9054816-9055655 29 3.7
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 29 4.9
05_03_0086 + 8279518-8280320,8280923-8281844 29 4.9
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 28 8.5
10_08_0011 + 14088375-14089241 28 8.5
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +2
Query: 212 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDD 391
S +HL Y S I +T V+ + + +N+ + ++ L++G D+
Sbjct: 62 SLYSHLYYSSLSID-ETRCAVAPPSSGEESSILSNFSSSIKSSGGGFAVKTILSIGTDEF 120
Query: 392 TEDPQK--YNPLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 520
ED ++ + R AF NS++ LA GFDG+DL+W+ P
Sbjct: 121 REDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 398 DPQKYNPLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 520
DP + + P +R AF +A+ +A + GFDG+D++W+ P
Sbjct: 131 DPA-FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 263 YKMVSLNENLDIDRAHANYRAITNLKR---QFPQLRVFLTVGGDDDTEDPQKYNPLLESP 433
Y V + E + ID+ + + ITN + +F RV LT D +D Q+ PLLE
Sbjct: 746 YTSVEVQEGMKIDKGYISPHFITNQDKAIVEFENARVLLT---DQRVDDVQEILPLLEK- 801
Query: 434 QARTAFTNSALLLAE 478
T + L++AE
Sbjct: 802 --TTQLSVPLLIIAE 814
>10_08_0009 + 14075929-14076789
Length = 286
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 299 DRAHANYRAITNLKRQFPQLRVFLTVGGD--DDTEDPQKYNPLLESPQARTAFTNSALLL 472
D A+ + A+ K P L V L +GGD +T + P +S L
Sbjct: 62 DTANLSPAAVAAAKAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGL 121
Query: 473 AEQYGFDGIDLSWQ 514
+ YG DG+D+ ++
Sbjct: 122 IDAYGLDGVDVDYE 135
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 452 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 565
T +L+ E + FD L+W + R P +I++++ +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 165 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 299
+++ H C+ W L S P+C LPA+ + + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>08_02_0992 +
23380855-23381195,23382464-23382506,23383306-23383371,
23384228-23384428,23384450-23384707,23384798-23385013,
23385148-23385321,23386151-23386312,23386594-23386635
Length = 500
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 230 LYKSAGIQADTYKMVSLNENLDIDRAHANYR-AITNLKRQFPQLRVFLTVGGDDDTE--D 400
L + Q Y+++S+NE D A YR AI N Q ++ V + E
Sbjct: 3 LSSNISTQKTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFS 62
Query: 401 PQKYNPLLESPQARTAF 451
QK +L P++RT +
Sbjct: 63 VQKAWEVLRDPKSRTEY 79
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 419 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKR-KPKKIRSSIGSFWHSIKKTFGTT 595
L++ P R AFT A + + FDG+ +W L + P + + F TT
Sbjct: 479 LVKEPHKRIAFTRGATEIKQHPFFDGV--NWALVRSLTPPSVPEPV-DFRQYAAAASATT 535
Query: 596 PVDDKESEH 622
P D K E+
Sbjct: 536 PKDKKPPEN 544
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 641 LVREMKQALNVKPNMQLVISVLP 709
LVR+ K + K NMQL++ +LP
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLP 362
>10_08_0011 + 14088375-14089241
Length = 288
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +2
Query: 299 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK--YNPL-LESPQARTAFTNSALL 469
D A+ + + +K P + V + +GGD +D K ++P ++S A + S ++
Sbjct: 62 DTANLSPADVAAVKAAHPNVSVMVGLGGDS-VQDTAKVFFSPTSVDSWVANAVASVSGII 120
Query: 470 LAEQYGFDGIDLSWQ 514
+ YG DG+D+ ++
Sbjct: 121 --DAYGLDGVDVDYE 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,072,954
Number of Sequences: 37544
Number of extensions: 356307
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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