Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K13
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 46 6e-06
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 43 3e-05
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 31 0.19
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 29 0.45
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.8
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 3.2
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 26 4.2
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 4.2
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 4.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.5
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 9.7
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.7
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 45.6 bits (103), Expect = 6e-06
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Frame = +1
Query: 145 TLDNLLGRCPSLKKLSLES-VQLKDSTCQLIGNCK--QLETLNLTMAQGITAGGLTSLLN 315
TL L+ R LK+LS++ +L L NC+ + L+L + + +
Sbjct: 215 TLSRLVSRNRGLKELSMDGCTELSHFITFLNLNCELDAMRALSLNNLPDLKDSDIELITC 274
Query: 316 GCLNLQSLNISWC-SLSEAALEALVGALPQRLQRLNVAGARIMTDEMVKQVCTRCPRLLE 492
L SL +S C L++++L +L L Q L L++ +TD V+ + C +
Sbjct: 275 KFSKLNSLFLSKCIGLTDSSLLSLT-KLSQSLTTLHLGHCYEITDIGVQCLLKSCKNITY 333
Query: 493 LDLSDCSQLGLCAVSALLSLTRLEHLALSRC 585
+D C +L AVSA+ L L+ + L +C
Sbjct: 334 IDFGGCLRLSDIAVSAIAKLPYLQRVGLVKC 364
Score = 42.7 bits (96), Expect = 5e-05
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Frame = +1
Query: 178 LKKLSLESVQ--LKDSTCQLIGNCKQLETLNLTMAQGITAGGLTSLLNGCLNLQSLNISW 351
L+KL+ V+ L D L+ + LNL+ I+ + LL LNL ++N S
Sbjct: 70 LRKLNCSRVRKFLTDKHLMLMTLATGISRLNLSGCTRISEPLIGKLLYQNLNLVTINFSN 129
Query: 352 C-SLSEAALEALVGALPQRLQRLNVAGARIMTDEMVKQVCTRCPRLLELDLSDCSQLGLC 528
SL LE + P L+ LN+ ++ D + Q+ RCP L L + +C +L
Sbjct: 130 IFSLPANILEYISDNCPN-LKALNIGNCGLVEDTGMVQIIKRCPYLNRLIIPNCRKLTDV 188
Query: 529 AVSALLSLTRLEHLALSRC 585
++ L L L +S C
Sbjct: 189 SLQILSEKEDLIELDISGC 207
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 43.2 bits (97), Expect = 3e-05
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Frame = +1
Query: 208 LKDSTCQLIGNCKQLETLNLTMAQGITAGGLTSLLNGCLNLQSLNISWC-SLSEAALEAL 384
L D+T +L + Q E L L ITA L + C NLQ+L++++C + + L
Sbjct: 230 LNDTTVKLFLSGGQTE-LKLYDCSKITADSLFQIAQYCPNLQTLHLTYCGQMQDQVLHFY 288
Query: 385 VGALPQRLQRLNVAGA-RIMTDEMVKQVCTRCPRLLELDLSDCSQLGLCAVSALLS-LTR 558
L + L ++ GA + + E + R +L+ L+L+D +++ + ++A++
Sbjct: 289 ADHLTE-LTDVSFQGAFLVSSSEWINFFKKRGSKLISLELTDTARIHVSVINAIVDCCPN 347
Query: 559 LEHLALSRCYY 591
L L LSR +Y
Sbjct: 348 LISLNLSRIFY 358
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 30.7 bits (66), Expect = 0.19
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 127 STIDLTTLDNLLGRCPSLKKLSLESVQLKDS-TCQLIGNCKQLETLNLTMAQGITAGGLT 303
S ++ T +L G P LK +QL+DS ++ + L+T+ L G+T +T
Sbjct: 106 SDLEWATEVDLYGNPPILK------LQLRDSFVWSMLAKFQGLQTIALD-GTGVTISSVT 158
Query: 304 SLLNGCLNLQSLNISWC 354
++L +++L+I WC
Sbjct: 159 NILLNIPTVKTLSIRWC 175
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 29.5 bits (63), Expect = 0.45
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Frame = +1
Query: 130 TIDLTTLDNLLGRCPSLKKLSLESVQLKDSTCQLIGNC---KQLETLNLTMAQGITAGGL 300
++++ +LD LL CP + + S ++ + +G K L + + AQ
Sbjct: 806 SVNMRSLDTLLA-CPKIDEALFNSTSVE--LTKHMGKSFFYKILRSSLASFAQVFIDITH 862
Query: 301 TSLLNGCLNLQSLNISWCSLSEAALEALVGA-LPQRL---QRLNVAGARI 438
S N C N+ L S C ++A L+ + +PQR+ LNV G +I
Sbjct: 863 NSKFNSCCNIYRLGYSMCMRAQAYLKRMKDIFIPQRMFITDLLNVIGRKI 912
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.5 bits (58), Expect = 1.8
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = -3
Query: 431 APATLSLCSRWGNAPTRASKAASLRLHHDIFSDCKLRHPLSKDVRPPAVIPWAI-VRFNV 255
A + LSL S P RA+ + L+ D S L HP D +P+A +F+
Sbjct: 147 ASSNLSLASLAKTQPERATPEVCVPLNPDTGS-VPLIHPEQTD----RGLPYAPDEKFHN 201
Query: 254 SSCLQLPMS*QVESFSWTLSRLSFFNDGHL 165
S L+LP +E S + SR DG++
Sbjct: 202 SGSLKLPKGASLEDLSRSPSRAVLNEDGNV 231
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +1
Query: 34 IVVRLASSEIGEWKPAILPPVSRIQYLDLSMSTIDLTTLDNLLGRCPSLKKLSLESVQLK 213
I+ L +SE WK A+ V R + + ++ + T D GR P +KKL ++
Sbjct: 292 IISSLDNSEAA-WKKALFLEVLRSIFSNTNLLYLMYTLFDGNEGRKPIIKKLVTSLSRIV 350
Query: 214 DSTCQLIG 237
+ +IG
Sbjct: 351 NEKPSVIG 358
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 331 QSLNISWCSLSEAALEALVGALPQRLQ 411
QSL IS +LS +++EALV A+ +L+
Sbjct: 781 QSLEISGLNLSPSSMEALVAAVDLQLK 807
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 102 YPISRFKHVHHRPDYPG 152
YPI +KH+HH D G
Sbjct: 1321 YPIKFYKHIHHPGDKTG 1337
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 148 LDNLLGRCPSLKKLSLESVQLKDSTCQLIGNCKQLETLN 264
L+NL CP +K+ LES+Q DS + I + K+ T N
Sbjct: 92 LNNL--NCPDIKRYILESLQ--DSLLKEISSLKETSTQN 126
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = -3
Query: 242 QLPMS*QVESFSWTLSRLSFFNDGHLPRRLSRVVRSMVDMLKSRYWIRETGGRIAGFHSP 63
+LPM + W +L+F+ +VR + + K+R W+ G SP
Sbjct: 680 KLPMEVLDGEYQWDRKKLTFYYHAKQRIDFRELVRDLFKVYKTRIWMCAVSG--TNMSSP 737
Query: 62 ISELAS 45
S AS
Sbjct: 738 ASINAS 743
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 67 EWKPAILPPVSRIQYLDLSMSTIDLTTLD 153
EWKP++ + R+ L +SM +D +D
Sbjct: 280 EWKPSVASKLKRLSCLVISMLDVDGFRID 308
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Frame = +1
Query: 280 GITAGGLTSLLNGCLNLQSLNISWCSLSEAALEALVGALPQRLQRLNVA-GARIMTDEMV 456
G T S ++ ++L +S+ +S + G A GA +
Sbjct: 723 GETENNQLSKISSSVSLAGNTVSFSPVSHTPINVTNGESQNNSNNDPSANGAARRLHKAA 782
Query: 457 KQVCTRCPRLLELDLSDCSQLGLCAVSALLS 549
+++C RC + + + DC + + S ++
Sbjct: 783 REICLRCANAISMIVDDCRKHNVILTSPFIA 813
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 184 KLSLESVQLKDSTCQLIGNCKQLETLN 264
KLS ES +L++ QL + Q+ETLN
Sbjct: 807 KLSEESTRLQELQSQLNQDKNQIETLN 833
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,768
Number of Sequences: 5004
Number of extensions: 56915
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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