Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K13
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.0  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   7.9  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   7.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 252 GNIEPDYGPRDNRWRPNVL 308
           G +E  + P D+ WRP+++
Sbjct: 94  GGVEMLHVPSDHIWRPDIV 112


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 488 WSWTCPIVPSSGSVPYQRCYHSPGSNISP*AGVTTISASLT 610
           +S +C  VP +      R  H P S+ S  A +TT + + T
Sbjct: 75  FSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTT 115


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 653 PQTSRYWSAVMETP 612
           P+  RY++A M+TP
Sbjct: 59  PEYQRYFTAFMDTP 72


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 653 PQTSRYWSAVMETP 612
           P+  RY++A M+TP
Sbjct: 59  PEYQRYFTAFMDTP 72


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 335 DCKLRHPLSKDVRPPAVIP 279
           +C+L+  L+  +RP  V+P
Sbjct: 241 ECRLKKCLTVGMRPECVVP 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,116
Number of Sequences: 438
Number of extensions: 4276
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)