Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K12
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 141 9e-35
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 141 9e-35
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 45 1e-05
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 45 1e-05
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 45 1e-05
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 27 2.3
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 26 3.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.9
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 9.1
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 25 9.1
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.1
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 141 bits (341), Expect = 9e-35
Identities = 63/72 (87%), Positives = 65/72 (90%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCG 180
SDYNIQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCG
Sbjct: 57 SDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCG 116
Query: 181 HTNNLRPKKKIK 216
HTN LRPKKK+K
Sbjct: 117 HTNQLRPKKKLK 128
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 141 bits (341), Expect = 9e-35
Identities = 63/72 (87%), Positives = 65/72 (90%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCG 180
SDYNIQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCG
Sbjct: 57 SDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCG 116
Query: 181 HTNNLRPKKKIK 216
HTN LRPKKK+K
Sbjct: 117 HTNQLRPKKKLK 128
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 57 SDYNIQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 57 SDYNIQKESTLHLVLRLRGG 76
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 133 SDYNIQKESTLHLVLRLRGG 152
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 209 SDYNIQKESTLHLVLRLRGG 228
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 285 SDYNIQKESTLHLVLRLRGG 304
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 361 SDYNIQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 57 SDYNIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 7 YNIQKESTLHLVLRLRGGT 63
Y+++ S LHLVL LRGG+
Sbjct: 59 YHLEGGSVLHLVLALRGGS 77
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 138 SPSSCNQLQEDQVWTHKQPPPQEEDQG 218
SP SC + E + ++ QEEDQG
Sbjct: 447 SPESCRKQYEKTIASYSSNQRQEEDQG 473
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 506 LSIAVAXYITISTNN*QHVITSSVLQTAWVPYLNSLG 616
LSI+ A TI + + + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 243 MNERINKLILDLLLGAEVVCVS 178
MNE IN L +L+ G +VC S
Sbjct: 1134 MNEDINSLSSELIYGGNLVCGS 1155
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 478 WWSSERYGNLKHRRGEXYYNFYQQL--TTRYYFER 576
+WS+ N K R E Y NF++ + T ++ ER
Sbjct: 282 FWSNFEIANFKFFRNEQYENFFRTMDATGGFWTER 316
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 535 NFYQQLTTRYYFERLTNGLGSIPEF 609
NFY + YF T G+ S+P F
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYF 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,579
Number of Sequences: 5004
Number of extensions: 50421
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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