Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K12
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32) 136 2e-32
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 84 8e-17
SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 45 6e-05
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 45 6e-05
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07) 28 5.5
SB_31052| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-14) 28 7.2
>SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32)
Length = 78
Score = 136 bits (328), Expect = 2e-32
Identities = 59/65 (90%), Positives = 62/65 (95%)
Frame = +1
Query: 22 ESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 201
ESTLHLVLRLRGG IEPSLRILA KYNC+KMICRKCYARLHPRATNCRK KCGH+NNLRP
Sbjct: 14 ESTLHLVLRLRGGVIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHSNNLRP 73
Query: 202 KKKIK 216
KKK+K
Sbjct: 74 KKKLK 78
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 84.2 bits (199), Expect = 8e-17
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICR 123
SDYNIQKESTLHLVLRLRGG IEPSLRILA KYNC+KMICR
Sbjct: 23 SDYNIQKESTLHLVLRLRGGVIEPSLRILAQKYNCDKMICR 63
>SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 69.3 bits (162), Expect = 2e-12
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +1
Query: 22 ESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICR 123
ESTLHLVLRLRGG IEPSLRILA KYNC+KMICR
Sbjct: 14 ESTLHLVLRLRGGVIEPSLRILAQKYNCDKMICR 47
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 57 SDYNIQKESTLHLVLRLRGG 76
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 57 SDYNIQKESTLHLVLRLRGG 76
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 133 SDYNIQKESTLHLVLRLRGG 152
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 209 SDYNIQKESTLHLVLRLRGG 228
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 285 SDYNIQKESTLHLVLRLRGG 304
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 361 SDYNIQKESTLHLVLRLRGG 380
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 437 SDYNIQKESTLHLVLRLRGG 456
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 513 SDYNIQKESTLHLVLRLRGG 532
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 57 SDYNIQKESTLHLVLRLRGG 76
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 133 SDYNIQKESTLHLVLRLRGG 152
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 209 SDYNIQKESTLHLVLRLRGG 228
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 285 SDYNIQKESTLHLVLRLRGG 304
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 361 SDYNIQKESTLHLVLRLRGG 380
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
SDYNIQKESTLHLVLRLRGG
Sbjct: 57 SDYNIQKESTLHLVLRLRGG 76
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 138 SPSSCNQLQEDQVWTHKQPPPQEEDQ 215
SP Q+ Q+W QPPPQ +DQ
Sbjct: 211 SPPGRGPPQDQQMWVAHQPPPQPQDQ 236
>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 118 CRKCYARLHPRATNCRKTKCGHTNNLRPKKKI 213
CRK Y LHP T C C N R KK +
Sbjct: 21 CRKVY--LHPLVTGCGHVLCTKCYNKRSKKHL 50
>SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07)
Length = 503
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 100 NCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 201
N + ++CR C R +P KC +T N RP
Sbjct: 347 NADYVLCRYCQRRFNPTVAERHIPKCANTTN-RP 379
>SB_31052| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-14)
Length = 283
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = -3
Query: 231 INKLILDLLLGAE---VVCVSTLGLPAIG-----CTRMETSIALATNHFLTVVLHSQD 82
IN I D L GA VVC+ + + TR + +I LA HF+++ L SQD
Sbjct: 55 INLAITDFLFGAAYAPVVCIELMDFNPLQPNLLRITREKINIFLALIHFVSLALISQD 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,068,255
Number of Sequences: 59808
Number of extensions: 384640
Number of successful extensions: 960
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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