Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K12
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 136 9e-33
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 136 9e-33
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 46 2e-05
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 46 2e-05
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 44 8e-05
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 44 8e-05
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 44 8e-05
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 44 8e-05
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 44 1e-04
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 44 1e-04
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 44 1e-04
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 44 1e-04
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 44 1e-04
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 44 1e-04
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 44 1e-04
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 44 1e-04
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 44 1e-04
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 44 1e-04
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 44 1e-04
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 44 1e-04
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 44 1e-04
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 44 1e-04
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 44 1e-04
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 30 1.1
At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote... 29 2.6
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 28 4.5
At3g62160.1 68416.m06984 transferase family protein low similari... 28 5.9
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 136 bits (330), Expect = 9e-33
Identities = 61/72 (84%), Positives = 65/72 (90%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCG 180
+DYNIQKESTLHLVLRLRGG IEPSL +LA KYN +KMICRKCYARLHPRA NCRK KCG
Sbjct: 57 ADYNIQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCG 116
Query: 181 HTNNLRPKKKIK 216
H+N LRPKKKIK
Sbjct: 117 HSNQLRPKKKIK 128
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 136 bits (330), Expect = 9e-33
Identities = 61/72 (84%), Positives = 65/72 (90%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCG 180
+DYNIQKESTLHLVLRLRGG IEPSL +LA KYN +KMICRKCYARLHPRA NCRK KCG
Sbjct: 57 ADYNIQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCG 116
Query: 181 HTNNLRPKKKIK 216
H+N LRPKKKIK
Sbjct: 117 HSNQLRPKKKIK 128
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGTI 66
+DYNIQKESTLHLVLRLRGGT+
Sbjct: 57 ADYNIQKESTLHLVLRLRGGTM 78
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 4 DYNIQKESTLHLVLRLRGGTI 66
DY I+ S LHLVL LRGG +
Sbjct: 134 DYAIEGGSVLHLVLALRGGLL 154
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGTI 66
+DYNIQKESTLHLVLRLRGGT+
Sbjct: 57 ADYNIQKESTLHLVLRLRGGTM 78
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1
Query: 4 DYNIQKESTLHLVLRLRGG 60
DYNI+ S LHLVL LRGG
Sbjct: 134 DYNIEGGSVLHLVLALRGG 152
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGT 63
+DYNIQKESTLHLVLRLRGG+
Sbjct: 361 ADYNIQKESTLHLVLRLRGGS 381
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 285 ADYNIQKESTLHLVLRLRGG 304
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGT 63
+DYNIQKESTLHLVLRLRGG+
Sbjct: 285 ADYNIQKESTLHLVLRLRGGS 305
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGT 63
+DYNIQKESTLHLVLRLRGG+
Sbjct: 285 ADYNIQKESTLHLVLRLRGGS 305
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGGT 63
+DYNIQKESTLHLVLRLRGG+
Sbjct: 209 ADYNIQKESTLHLVLRLRGGS 229
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYN+Q++STLHL+LR RGG
Sbjct: 57 ADYNVQEDSTLHLLLRFRGG 76
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 135 ADYNIQKESTLHLVLRLRGG 154
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 288 ADYNIQKESTLHLVLRLRGG 307
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRL GG
Sbjct: 211 ADYNIQKESTLHLVLRLCGG 230
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DY+IQK+S LHL LRLRGG
Sbjct: 59 ADYSIQKDSILHLALRLRGG 78
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 285 ADYNIQKESTLHLVLRLRGG 304
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 361 ADYNIQKESTLHLVLRLRGG 380
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 285 ADYNIQKESTLHLVLRLRGG 304
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 285 ADYNIQKESTLHLVLRLRGG 304
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 361 ADYNIQKESTLHLVLRLRGG 380
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 285 ADYNIQKESTLHLVLRLRGG 304
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 285 ADYNIQKESTLHLVLRLRGG 304
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 209 ADYNIQKESTLHLVLRLRGG 228
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 285 ADYNIQKESTLHLVLRLRGG 304
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 59 ADYNIQKESTLHLVLRLRGG 78
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRL GG
Sbjct: 135 ADYNIQKESTLHLVLRLCGG 154
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLR 54
+DY+IQKESTLHLVL ++
Sbjct: 377 ADYSIQKESTLHLVLGMQ 394
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 4 DYNIQKESTLHLVLRLR 54
DY+I K+STL+LVLRLR
Sbjct: 609 DYDIHKKSTLYLVLRLR 625
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 4 DYNIQKESTLHLVLRLRGG 60
DYNI+ ESTLHL +R G
Sbjct: 450 DYNIRNESTLHLFFHIRHG 468
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 4 DYNIQKESTLHLVLRLRGG 60
DYNIQK ST+H + RGG
Sbjct: 533 DYNIQKGSTIHQLFLQRGG 551
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1
Query: 7 YNIQKESTLHLVLRLRGG 60
YNIQK STL+LV R R G
Sbjct: 301 YNIQKGSTLYLVTRFRCG 318
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 208 ADYNIQKESTLHLVLRLRGG 227
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 10 NIQKESTLHLVLRLRGG 60
NIQKESTLHLVLRLRGG
Sbjct: 135 NIQKESTLHLVLRLRGG 151
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRLRGG 60
+DYNIQKESTLHLVLRLRGG
Sbjct: 57 ADYNIQKESTLHLVLRLRGG 76
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 7 YNIQKESTLHLVLRLRGG 60
YN+++ S LHLVL LRGG
Sbjct: 59 YNLERGSVLHLVLALRGG 76
>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor-like
protein kinase
Length = 680
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +1
Query: 361 YTYCSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERY---GNLKHRR--GE 525
Y SN FL+ + +L+ + + F + +F+ LP W+ S Y + K + GE
Sbjct: 145 YLDLSNNFLFGSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWYLKVLSFKSNKLSGE 204
Query: 526 XYYNFYQQLTTRYYFERLTNGLGSIPE 606
+ + T Y R + GS+P+
Sbjct: 205 LHSSLLSLSTIEYIDLRANSLSGSLPD 231
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 1 SDYNIQKESTLHLVLRL 51
+DYNIQ +S LHL+ RL
Sbjct: 142 ADYNIQNDSILHLIKRL 158
>At3g62160.1 68416.m06984 transferase family protein low similarity
to Taxus cuspidata transferases: 10-deacetylbaccatin
III-10-O-acetyl transferase GI:6746554, taxadienol
acetyl transferase GI:6978038,
2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
transferase GI:11559716; contains Pfam profile PF02458
transferase family
Length = 428
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 630 LNRRVPREFRYGTQAVCKTLEVITCC 553
L R REFR T +C EVI C
Sbjct: 228 LIERFKREFRASTGEICSAFEVIAAC 253
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,389,466
Number of Sequences: 28952
Number of extensions: 264865
Number of successful extensions: 763
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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