Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K11
         (181 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   1.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    20   2.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    20   2.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    20   2.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    20   2.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    20   2.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    20   2.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   4.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   4.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   4.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   4.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   4.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   7.2  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 23  EQEVNTRALKQCYREAREEIDELRTLMKEQNDQLQDYRVKYLQAQQLVEEQR 178
           EQ +      Q Y    EEI   ++     +    +Y+ + ++ +  VEEQR
Sbjct: 136 EQNLYLTPSPQMYSSGGEEITPRQSHQSYHHMDSVEYKPEIMEYKPDVEEQR 187


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 NSVVLQLIILFFH 101
           +SVVL +++L FH
Sbjct: 270 SSVVLTVLVLIFH 282


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 NSVVLQLIILFFH 101
           +SVVL +++L FH
Sbjct: 270 SSVVLTVLVLIFH 282


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 NSVVLQLIILFFH 101
           +SVVL +++L FH
Sbjct: 270 SSVVLTVLVLIFH 282


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 NSVVLQLIILFFH 101
           +SVVL +++L FH
Sbjct: 270 SSVVLTVLVLIFH 282


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 NSVVLQLIILFFH 101
           +SVVL +++L FH
Sbjct: 270 SSVVLTVLVLIFH 282


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 NSVVLQLIILFFH 101
           +SVVL +++L FH
Sbjct: 270 SSVVLTVLVLIFH 282


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 28  RSKHESPEAMLQGGTRRNR*TENLDE 105
           R K   P+A  +GGT  N      DE
Sbjct: 352 RFKVHDPKAHSKGGTLENTINGRADE 377


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 28  RSKHESPEAMLQGGTRRNR*TENLDE 105
           R K   P+A  +GGT  N      DE
Sbjct: 352 RFKVHDPKAHSKGGTLENTINGRADE 377


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 54 NVTGRHEKKSMN 89
          ++ GRHEK+ +N
Sbjct: 49 SLCGRHEKRLLN 60



 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 NSVVLQLIILFFH 101
           +SVVL +++L FH
Sbjct: 338 SSVVLTVLVLNFH 350


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 54 NVTGRHEKKSMN 89
          ++ GRHEK+ +N
Sbjct: 49 SLCGRHEKRLLN 60



 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 NSVVLQLIILFFH 101
           +SVVL +++L FH
Sbjct: 338 SSVVLTVLVLNFH 350


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/28 (17%), Positives = 16/28 (57%)
 Frame = +2

Query: 50  KQCYREAREEIDELRTLMKEQNDQLQDY 133
           ++ + +    +DE+RT  K+ +  ++ +
Sbjct: 319 RETFNQLISSLDEIRTRYKDSSSSVEGW 346


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 28  RSKHESPEAMLQGGTRRNR*TENLDE 105
           R K   P+A  +GGT  N      DE
Sbjct: 290 RFKVHDPKAHSKGGTLENTINGRADE 315


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 59   YREAREEIDELRTLMK 106
            YR+ +EE+ EL  L K
Sbjct: 1016 YRQEKEEMVELGVLDK 1031


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,018
Number of Sequences: 438
Number of extensions: 498
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)