Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K09
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502...    31   1.2  
03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   1.2  
01_01_0106 + 788967-789555,790139-790162,790339-791411                 28   6.3  
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950...    28   8.4  
04_04_0444 + 25270620-25273001                                         28   8.4  

>01_05_0548 +
           23149271-23149568,23149766-23149845,23150137-23150223,
           23150421-23150729,23150774-23150899,23151977-23152360,
           23152603-23152608
          Length = 429

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 237 LVTFFDYSQFDATNSVFLTK-----KEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIAT 401
           L   F +S F ++++  + +      ++KT    ++ ++ PRL +   S+  DV + +  
Sbjct: 64  LAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGE 123

Query: 402 DAVIKIFLGPKYNDNGFP 455
           D  +K +    Y  NG P
Sbjct: 124 DIKVKPWAHTVYGKNGIP 141


>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 1.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 410 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 309
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 1.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 278 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 186
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 342 PRLNHKPFSVTIDVXSDIATDA--VIKIFLGPKYNDNGFPITLEENWHKFYELDWFTHKI 515
           P L  + F V I   SD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 516 TPGQNKIV 539
             GQN ++
Sbjct: 491 FTGQNLLI 498


>07_03_1342 -
           25891761-25892102,25892588-25893135,25893342-25895012,
           25895818-25896745
          Length = 1162

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 703 NGYPRSVPLXNINLLACHSKPSDIYNGTFPSSKXFMRSVNGKESSLKSE 557
           NG+  SVP+ N   L   +  S+ ++G+ PS+     SV+   + L  E
Sbjct: 306 NGFSGSVPVVNSTTLKLLNLSSNTFSGSLPSTVGKCSSVDLSGNQLSGE 354


>04_04_0444 + 25270620-25273001
          Length = 793

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 474 WHKFYELDWFTHKITPG-QNKIVRNSNEFSLFKEDSLPFTDLMK 602
           W    E DW T    PG Q  +      F+L +ED LPF + M+
Sbjct: 283 WSSVSE-DWVTFYAKPGAQCDVYAVCGAFALCREDMLPFCNCME 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,082,448
Number of Sequences: 37544
Number of extensions: 356168
Number of successful extensions: 816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)