Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K09
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17480.1 68416.m02233 F-box family protein contains F-box dom...    33   0.25 
At3g17490.1 68416.m02234 F-box family protein similar to F-box p...    31   0.57 
At5g67170.2 68418.m08468 SEC-C motif-containing protein / OTU-li...    29   3.0  
At5g67170.1 68418.m08467 SEC-C motif-containing protein / OTU-li...    29   3.0  
At2g23200.1 68415.m02771 protein kinase family protein contains ...    28   5.3  
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic...    28   7.0  
At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS...    27   9.2  
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS...    27   9.2  
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)...    27   9.2  
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ...    27   9.2  
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont...    27   9.2  

>At3g17480.1 68416.m02233 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 373

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 444 NGFPITLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKED 575
           N    T+  +W KF  +D +TH+   G    +   N+ ++F ED
Sbjct: 286 NDITDTIVTSWSKFLRVDLYTHRFYNGVTFFIDEENKAAVFSED 329


>At3g17490.1 68416.m02234 F-box family protein similar to F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains Pfam PF00646: F-box domain and
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 388

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 652 HSKPSDIYNGTFPSSKXFMRSVNGKESSLKSENSFELRTILFCPGVILC 506
           +S  S+++     ++   +    GK SSL   N FE+  I  C G+ILC
Sbjct: 65  YSMSSNLHGLLHNNNIDLLMEFKGKLSSLNDLNDFEISQIYPCDGLILC 113


>At5g67170.2 68418.m08468 SEC-C motif-containing protein / OTU-like
           cysteine protease family protein contains Pfam profiles
           PF02338: OTU-like cysteine protease, PF02810: SEC-C
           motif
          Length = 374

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 534 IVRNSNEFSLFKEDSLPFTDLMKXLDE 614
           IV+N   F  F ED +PF D  K +D+
Sbjct: 74  IVKNREMFEPFIEDDVPFEDYCKTMDD 100


>At5g67170.1 68418.m08467 SEC-C motif-containing protein / OTU-like
           cysteine protease family protein contains Pfam profiles
           PF02338: OTU-like cysteine protease, PF02810: SEC-C
           motif
          Length = 375

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 534 IVRNSNEFSLFKEDSLPFTDLMKXLDE 614
           IV+N   F  F ED +PF D  K +D+
Sbjct: 75  IVKNREMFEPFIEDDVPFEDYCKTMDD 101


>At2g23200.1 68415.m02771 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 834

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 387 SDIATDAVIKIFLGPKYNDNGFPITLEENWHKFYELDWFTHKITPGQNKIVRN---SNEF 557
           S +A    I++F  P  +D   P   ++N H  Y L+    KITP  + + R     ++ 
Sbjct: 177 SSLALINAIEVFSAP--DDLEIPSASDKNLHTIYRLNVGGEKITPDNDTLGRTWLPDDDD 234

Query: 558 SLFKEDS 578
            L+++DS
Sbjct: 235 FLYRKDS 241


>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
           to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
           thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
          Length = 344

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +3

Query: 72  SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFF 251
           SA   ++ A+      +L   ++   +A KH+  P P   +   GV +N   V   V  F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240

Query: 252 DYSQFDATNSVFLTK 296
            YS ++++ S  LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255


>At3g61160.2 68416.m06845 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 438

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 423 LGPKYNDNGFPITLEENWHKFY 488
           + P+YND  FP    + WHK +
Sbjct: 337 MNPRYNDFKFPQIKAQPWHKIF 358


>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 431

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 423 LGPKYNDNGFPITLEENWHKFY 488
           + P+YND  FP    + WHK +
Sbjct: 330 MNPRYNDFKFPQIKAQPWHKIF 351


>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
           similar to RNA helicase GB:CAA09204 from [Arabidopsis
           thaliana]; identical to cDNA DEAD box RNA helicase, RH13
           GI:3776002
          Length = 832

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 288 LTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVIKIFLGPKYNDNGFPITLE 467
           L KK  K S+    +    R++  P+S +I +  D   ++   +F G    D GF ++LE
Sbjct: 10  LMKKRNKRSHKRKREEDFERIDSLPWSSSIPIGEDDEGESFSTLFSGSGQLDGGF-LSLE 68

Query: 468 E 470
           E
Sbjct: 69  E 69


>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
           TIGR01640 : F-box protein interaction domain;
          Length = 364

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 350 ESWLTNLEVVWVTSLNLFFGQEYTVSG--IKLAIVKECD*FLNDNI-IDF 210
           ESW  NL ++    ++ +F Q Y V G  ++ + V E     N+ + IDF
Sbjct: 39  ESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDF 88


>At1g33610.1 68414.m04160 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 907

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 703 NGYPRSVPLXNINLLACHSKP--SDIYNGTFPSSKXFMRSVNGKESSLKSENSFELRTI 533
           N Y   VP+   NL+   +     ++  G FP     ++S+NG ES   S N F L+TI
Sbjct: 710 NKYSGVVPMSFTNLINITNLDLSHNLLTGPFP----VLKSINGIESLDLSYNKFHLKTI 764


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,476
Number of Sequences: 28952
Number of extensions: 305755
Number of successful extensions: 940
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)