Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K07
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    29   2.6  
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896...    29   3.5  
10_02_0136 + 5719136-5719780,5719923-5720237                           27   8.0  
06_03_0846 - 25328224-25330613,25330716-25330794                       27   8.0  

>03_02_0901 +
           12267042-12267182,12267949-12268095,12268163-12268253,
           12268367-12268485,12268779-12268969,12269440-12269650,
           12270072-12270309,12270944-12271329,12271933-12271956,
           12271984-12272077,12272341-12272525,12273025-12273255,
           12273665-12273730,12273816-12274034,12274764-12275003,
           12275244-12275423,12276269-12276535,12276612-12276815,
           12276896-12277048
          Length = 1128

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 57  DTLKYWDIGSAFLIGGNAKVYEGSGWVHVSVPTHAYNRKALR 182
           + ++Y+D     L+GG     E +G++  S+  H ++RK L+
Sbjct: 754 ELVEYFDPCHPILVGGIGLGEENTGYMQASLKRHRWHRKVLK 795


>09_04_0300 -
           16488358-16488447,16488684-16489116,16489377-16489642,
           16490015-16490044,16490282-16490606,16491752-16492035,
           16492154-16492376,16493117-16493173,16494454-16494947
          Length = 733

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 248 RFQCVDLFCCWLVGVVIS 195
           R+ CVD  CCWLVG V S
Sbjct: 63  RWSCVDS-CCWLVGCVCS 79


>10_02_0136 + 5719136-5719780,5719923-5720237
          Length = 319

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 395 AVNIFEPFGPPSDYVIKFSTRAISGH 318
           AV+I EPFG    YV  ++ R + GH
Sbjct: 152 AVDIPEPFGRRPAYVSNWAMRCVDGH 177


>06_03_0846 - 25328224-25330613,25330716-25330794
          Length = 822

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 354 IIRRWPEWLENVDSYKE 404
           II+RW  W   VD++KE
Sbjct: 640 IIQRWMRWFSEVDNFKE 656


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,147,707
Number of Sequences: 37544
Number of extensions: 319177
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)