Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K07
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    27   9.5  

>Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 60  TLKYWDIGSAFLIGGNAKVYEGSGWVHV 143
           TLKY+ +GS+FL+     +Y+  G+VHV
Sbjct: 225 TLKYFVVGSSFLV----SLYQIHGYVHV 248


>Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 60  TLKYWDIGSAFLIGGNAKVYEGSGWVHV 143
           TLKY+ +GS+FL+     +Y+  G+VHV
Sbjct: 225 TLKYFVVGSSFLV----SLYQIHGYVHV 248


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 240 LKSLLRCGVNNGHLDSDYNVVGHRQ 314
           ++ LL C ++N H+  DY ++ H Q
Sbjct: 337 IEELLACELHNVHIHEDYRLILHEQ 361


>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 230 LFCCWLVGVVISYNRDSKSFPVVRVSGHANVH-PTGSFIY 114
           +F CWL    +S    +K F  +       +H P+G+ +Y
Sbjct: 4   IFLCWLAIATVSQTVSAKKFMKIFADAGIGIHCPSGNKVY 43


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 240 LKSLLRCGVNNGHLDSDYNVVGHRQ 314
           ++ LL C ++N H+  DY ++ H Q
Sbjct: 339 IEELLACELHNVHIHEDYRLILHEQ 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,256,987
Number of Sequences: 27780
Number of extensions: 284002
Number of successful extensions: 590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)