Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K05
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0216 - 14954047-14956098                                         33   0.25 
04_03_0922 + 20834195-20836603                                         31   1.00 
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    29   2.3  
04_03_0916 + 20794240-20794246,20794585-20796545                       29   2.3  
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625...    29   3.0  
04_03_0913 + 20777859-20780309                                         28   7.0  
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420...    27   9.3  
11_04_0041 - 12690287-12690816,12691087-12691378                       27   9.3  
09_03_0172 - 13072575-13073800,13075919-13076054                       27   9.3  

>11_04_0216 - 14954047-14956098
          Length = 683

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 477 FGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVV 340
           FG      GF  G+ E+R+E  P  VE+++C    + +    +R++
Sbjct: 249 FGSSSDGDGFSDGVEEKRLECDPVSVEIKKCEPPAKSLSSVSRRIL 294


>04_03_0922 + 20834195-20836603
          Length = 802

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 180 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 311
           QP+ QC       P    + +EL  C+C  G  ++  +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334


>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 285 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 169
           LE + HSG  + +V  L N W ++    F  + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455


>04_03_0916 + 20794240-20794246,20794585-20796545
          Length = 655

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 180 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 311
           QP+ QC       P    + +EL +C C  G  +   +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179


>05_03_0212 +
           10260690-10261272,10261921-10262435,10262446-10262569,
           10262840-10263042,10263169-10263240,10264905-10265007,
           10265350-10265582
          Length = 610

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 558 KKNDFLKTMVLNNFFKF*INDCFKLEIFGKRETSAGFPRGLNERRIELLPTGVEVQRCGR 379
           K+  F+ + V  +     + D FK  +        G PRG   ++++ L   +  + CG 
Sbjct: 425 KRTPFVDSQVRRSGRLLALRDGFKNILQEDPNMGVGKPRGKAVKKLKQLAEKIGSEMCGT 484

Query: 378 SLEEI 364
           SLEE+
Sbjct: 485 SLEEV 489


>04_03_0913 + 20777859-20780309
          Length = 816

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 180 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 311
           QP+  C       P      +EL HC C  G  V   +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332


>12_02_0244 -
           16241243-16241279,16241781-16241848,16241930-16242032,
           16242095-16242256,16242305-16242369,16242547-16242612,
           16242738-16242829,16243029-16243134,16243231-16243279,
           16243387-16243540,16243661-16243687,16243797-16243959,
           16244621-16244701
          Length = 390

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 303 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 199
           R  NLV+++V HSG + +++    LRN+   FS  CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390


>11_04_0041 - 12690287-12690816,12691087-12691378
          Length = 273

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 371 SRLRPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNIS 484
           SRLRP+R  S P  RS   + +S R  P+     P  S
Sbjct: 138 SRLRPNRCLSEPFRRSGTLVFMSGREEPSFAEPEPEPS 175


>09_03_0172 - 13072575-13073800,13075919-13076054
          Length = 453

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 351 QRVVITIKDIGVSGGRRCTNLVLEHVV 271
           + V++T+KD+   GGR CT L  E  +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,577,458
Number of Sequences: 37544
Number of extensions: 363526
Number of successful extensions: 895
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)