Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K05
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19130.1 68415.m02233 S-locus lectin protein kinase family pr...    29   3.4  
At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    28   5.9  
At2g44020.1 68415.m05473 mitochondrial transcription termination...    28   5.9  

>At2g19130.1 68415.m02233 S-locus lectin protein kinase family
           protein contains Pfam domains PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 828

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +3

Query: 180 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQ-DWCICD 308
           QPR QCQ  R+       S      CRC  G     Q DW + D
Sbjct: 285 QPRQQCQVYRYCGSFGICSDKSEPFCRCPQGFRPMSQKDWDLKD 328


>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -3

Query: 489 KLEIFGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVVITIKDIGVSG 310
           +LE+ GK+  +A F  G    +I      VE +R  +S    + S +   I I D+   G
Sbjct: 205 RLEVMGKKAKNASFISGTEAGKISKEIVKVEKRRIVKSTLCNERSSRSHCIIILDVPTVG 264

Query: 309 GR 304
           GR
Sbjct: 265 GR 266


>At2g44020.1 68415.m05473 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 507

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 419 SIRLSLSPRGNPALVSRFPNISNLKQSLI 505
           S++L + P G   +V + P I +LKQ++I
Sbjct: 332 SLKLKIDPEGFARVVEKMPQIVSLKQNVI 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,176
Number of Sequences: 28952
Number of extensions: 288114
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)