Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K04
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    30   0.27 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    29   0.35 
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   1.9  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   3.3  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   5.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   5.8  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   7.6  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   7.6  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 202 GNLSTGRSITLLSAKMKDPWYS*DRKRLTRANTNASLK 315
           G+L  G    LL  +   PWY  D  R+TRA     L+
Sbjct: 458 GDLHNGHYYALLKTEKDGPWYKYDDTRVTRATLREVLE 495


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 26/98 (26%), Positives = 42/98 (42%)
 Frame = +3

Query: 132 NPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCFA 311
           NP V    + GN+Q   +S   D  ++N    NA +         LR  + +       +
Sbjct: 534 NPRVTRFNV-GNEQ---FSNNIDNNNYNQPYANATMNNSRR----LRTPSGERSMRADLS 585

Query: 312 ETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQ 425
           ++PA   S  V   R+   + SP+ T +K  + G PFQ
Sbjct: 586 QSPASYDSLNVPKHRRRQSLFSPSSTKKK--LSGSPFQ 621


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 21  SKSIAVLSACIIVGSALPVDKYPVLKDQPAE 113
           SKSIA L  CI +G + P  K PV+K Q  E
Sbjct: 57  SKSIAKLDLCIELGRSYPYVK-PVIKLQNGE 86


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 471 WKKR--LSGADPNADVTDFDRRITAGPDGN 554
           WK+   ++  +PNA +T F+R   +  DGN
Sbjct: 458 WKRTDDIASGEPNAILTSFNRNFRSRNDGN 487


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
 Frame = +2

Query: 8   VNNGV*EHSSIKRLH-NCGLS---ASRG*IPGAERPTGRGPLQGEQPNGPRMSHRRKRSG 175
           V+ GV E S++  +H N  L    AS    P A+      PL    P   R S   KR+G
Sbjct: 22  VDEGVVERSALDWVHANIHLQDGPASPVTAPAAQPVESSVPL----PLPKRKSSVEKRAG 77

Query: 176 SQVLLAKGWEIFQLAGA*RCSPQR*RIPGIP 268
           S         + Q +G  R   +  ++PG+P
Sbjct: 78  SVASAVAAMSLSQNSGEKRTPEEPRKLPGVP 108


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 468  TWKKRLSGADPNADV 512
            TW+KRL G   N DV
Sbjct: 1468 TWRKRLEGCQKNVDV 1482


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 374 IASEDTRENANRRQAFPIGLCAAERL 451
           I + DT   A RRQ F   L AAER+
Sbjct: 474 IFNNDTLSRAERRQRFRQSLRAAERI 499


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 348 SFRKTYLIASPAKTHEKTP 404
           +FRKTYL AS A  H   P
Sbjct: 585 AFRKTYLFASNAGIHINAP 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,413
Number of Sequences: 5004
Number of extensions: 51672
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)