Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K04
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative sim...    29   2.8  
At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative sim...    29   2.8  
At1g52050.1 68414.m05872 jacalin lectin family protein similar t...    28   3.7  
At1g51590.1 68414.m05808 mannosyl-oligosaccharide 1,2-alpha-mann...    28   3.7  
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ...    28   4.9  
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a...    27   6.5  
At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical ...    27   8.6  
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r...    27   8.6  
At4g17730.1 68417.m02647 syntaxin 23 (SYP23) / PEP12-like protei...    27   8.6  
At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative si...    27   8.6  

>At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 442

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 153 LIEGNDQGVKYSWQKDGKSFNWQEHN--AALRKDEGSLVF 266
           +  G  + +KY   +D + F WQE N  A L +D  +L F
Sbjct: 257 MASGLAEVIKYGLIRDAEFFEWQEKNIEALLARDPAALAF 296


>At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 338

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 153 LIEGNDQGVKYSWQKDGKSFNWQEHN--AALRKDEGSLVF 266
           +  G  + +KY   +D + F WQE N  A L +D  +L F
Sbjct: 153 MASGLAEVIKYGLIRDAEFFEWQEKNIEALLARDPAALAF 192


>At1g52050.1 68414.m05872 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 313

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 132 NPTVLECLIEGNDQGVKY---SWQKDGKSFNWQEHNAA 236
           N  V +  I G+ +G++Y    + KDG+SFN   H  +
Sbjct: 42  NDNVAKVYIRGDHEGIQYIKFDYVKDGQSFNGSVHGVS 79


>At1g51590.1 68414.m05808 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 560

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 93  LKDQPAEVLFKENNPTVLECLIEGNDQGVKYSWQKD 200
           LKD P + + K+    V E +I       KY+W KD
Sbjct: 85  LKDAPEDPVDKQRRQKVKEAMIHAWSSYEKYAWGKD 120


>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
           strong similarity to ubiquitin conjugating enzyme
           [Lycopersicon esculentum] GI:886679; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 192

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 399 TPIEGRPFQLDCVQPNAYP 455
           TP EG  FQ+D   P+ YP
Sbjct: 45  TPYEGGTFQIDITMPDGYP 63


>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1050

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 158 DETFEDRWVVLLEEDLGRLVFQHRVFIHGKR 66
           +E F+ R   +LE+DL  +VF H + + G R
Sbjct: 109 NENFQRRCYWMLEQDLMHIVFVHYLEVKGNR 139


>At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical to
           amino acid permease 6 (AAP6) [Arabidopsis thaliana]
           GI:1769887
          Length = 481

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 482 TFLPSNQGFRVSVRLHTVQLERPAFDWRFLVCLRWRCDEVSLPEA 348
           +F P    F + + +   ++ + +F W +L  L W C  VSL  A
Sbjct: 417 SFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAA 461


>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
            family protein contains Pfam PF00400: WD domain, G-beta
            repeat; contains Pfam PF00069: Protein kinase domain;
            contains PF02985: HEAT repeat; similar to adaptor protein
            (GI:1817584) [Homo sapiens]; similar to VPS15 protein
            (GI:6103009) [Pichia pastoris]
          Length = 1494

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +3

Query: 231  AALRKDEGSLVFLRPQASDEGQYQCFAET--PAGVASSRVISFRKTYLIASP-AKTHEKT 401
            A++  +EG L  L+P  + E  Y+ F +T  P  +A       RK +  +SP +K  E  
Sbjct: 784  ASIASEEGLLSCLKPPVTREVVYRIFEKTRNPEFMAKQ-----RKMWYSSSPQSKDWESV 838

Query: 402  PIEGRPF-QLDCVQPNAYPKPLITWKKRLSGADPNADV 512
             +  +   +L+ V+  A  K  +  KK++  A    +V
Sbjct: 839  DLFDKDAGELNSVECRAEQKQSVEGKKQIKSASKQPEV 876


>At4g17730.1 68417.m02647 syntaxin 23 (SYP23) / PEP12-like protein
           identical to SP|O04378 Syntaxin 23 (AtSYP23) (AtPLP)
           (AtPEP12-like protein) {Arabidopsis thaliana}
          Length = 255

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +3

Query: 60  GSALPVDKYPVLKDQPAEVLFKENNPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAAL 239
           G   P  +  +++ +  E++  +N     E +IE  +QG++   Q+ G+     +  A L
Sbjct: 155 GDKHPEQRALLVESKRQELVLLDNEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVL 214

Query: 240 RKDEGSLV 263
             D+G+++
Sbjct: 215 VHDQGNMI 222


>At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative
           similar to SP|P47047 ATP-dependent RNA helicase DOB1
           {Saccharomyces cerevisiae}, HUA enhancer 2 [Arabidopsis
           thaliana] GI:16024936; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 988

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 345 ISFRKTYLIASPAKTHEKTPIEGRPFQLDCVQPNA 449
           +SF + Y+  +P+  H K P +  PF LD  Q  A
Sbjct: 42  VSFPENYVPLAPS-VHNKPPAKDFPFTLDSFQSEA 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,939,391
Number of Sequences: 28952
Number of extensions: 286933
Number of successful extensions: 808
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)