Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K03
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical ...    31   0.46 
AL032625-5|CAH60795.1|  498|Caenorhabditis elegans Hypothetical ...    28   3.3  
AL032625-3|CAB63349.1|  514|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine r...    27   10.0 

>AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical
           protein Y38H6A.1 protein.
          Length = 218

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 174 ALYYACAHKHVLSLFRFMDYQTTTMLKKFIRFLKISLLTRV 296
           A  YACA K+   +     Y+  T++ KF RFL   + +++
Sbjct: 168 AKQYACAIKYAPQVVTVTGYKCATVIDKFFRFLSFFIFSQI 208


>AL032625-5|CAH60795.1|  498|Caenorhabditis elegans Hypothetical
           protein Y37H9A.1b protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 172 WEKASQPEAALALVAPVCNQYSGAFSRRAVKMEYFSYIFKRKFG 41
           W +  +     AL+  V ++YS  FS  +  + YFS +F+  +G
Sbjct: 148 WLEFQKSPRYSALLQRVLSKYSPDFSENSTILAYFSVLFEMDYG 191


>AL032625-3|CAB63349.1|  514|Caenorhabditis elegans Hypothetical
           protein Y37H9A.1a protein.
          Length = 514

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 172 WEKASQPEAALALVAPVCNQYSGAFSRRAVKMEYFSYIFKRKFG 41
           W +  +     AL+  V ++YS  FS  +  + YFS +F+  +G
Sbjct: 148 WLEFQKSPRYSALLQRVLSKYSPDFSENSTILAYFSVLFEMDYG 191


>Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical
           protein F28H7.11 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 245 RCGLIVHETKKRQYVFVRACVVQSLGKGITTRGGFSPC 132
           R G++   TK++Q   ++A +VQ++   I     FSPC
Sbjct: 230 RAGIMSESTKRQQNQLMKALIVQTITPTIAC---FSPC 264


>AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein16 protein.
          Length = 286

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 373 IVFCHYNSK*SNWLVFNLLKKKCVRFT 293
           IV CH+    ++W +  L  KKC R T
Sbjct: 141 IVACHFKYDDASWSLAFLPSKKCTRLT 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,852,606
Number of Sequences: 27780
Number of extensions: 214371
Number of successful extensions: 467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)