Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K03
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.0  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   3.1  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   7.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 183 YACAHKHVLSLFRFMDYQTTTMLKKFIR 266
           Y  A KHV S+        T+M K F+R
Sbjct: 216 YCYAQKHVKSIRAVTKLPDTSMAKSFVR 243


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 210 TIRVCARMRSTKLG-KRHHNQRRL*PL 133
           T  VC +  STKL  KRH  Q+   PL
Sbjct: 373 TCDVCGKTLSTKLTLKRHKEQQHFQPL 399


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 74  FHFDRAPTKGPRILVAH 124
           FHF+R  T+  RI +AH
Sbjct: 27  FHFNRYLTRRRRIEIAH 43


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 74  FHFDRAPTKGPRILVAH 124
           FH++R  T+  RI +AH
Sbjct: 27  FHYNRYLTRRRRIEIAH 43


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 74  FHFDRAPTKGPRILVAH 124
           FH++R  T+  RI +AH
Sbjct: 289 FHYNRYLTRRRRIEIAH 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,135
Number of Sequences: 438
Number of extensions: 2731
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)