Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K01
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.5  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   6.2  
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    25   6.2  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   6.2  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   8.1  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   8.1  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   8.1  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   8.1  

>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 265 GAGVDYMFKDKIGASATAAHTDVFDRNDYSLGG 363
           G+G   +F DK G    A     FD+ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 479 ENEKLVLGSHEDLMKGVSNFFQPALK 402
           EN  L + SH DL++ V NF   A K
Sbjct: 72  ENVLLKIASHVDLVEPVENFISTAKK 97


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 139 GDKMTAAGKVNLFHNDNHDFSAKAFATKNMPNIPQVPNFNTVGAG 273
           G  +    KVN+F  D  DF+A     K M   P +P   TV AG
Sbjct: 64  GSSLEKLVKVNIFLTDIDDFAAMNEVYKEMLPDP-MPARTTVAAG 107


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 416 GRSSIRLSLSPRGNPALVSRFPNISKL 496
           G  ++ LSL  + +P+L ++F  ISKL
Sbjct: 799 GYGTVGLSLGYKNDPSLTAQFRKISKL 825


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 100  HGATLTKTHIPGFGDKMTAAGKV 168
            HG T+   HI   GD MT  G+V
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 85  DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 174
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 77  WLMTT*TDTERPSQKLISLGSVTK*RLPAKXXXXXXXXXXXVPKHSPLKTCQIFLKFRTS 256
           WL+   ++TE P+Q+L +L S++K  +                +   + T  +  KF T+
Sbjct: 192 WLLEHCSETEIPAQQLQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTN 251

Query: 257 TLS-VPEWTTCS 289
           T     E  +CS
Sbjct: 252 TAKYANELVSCS 263


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 252 VRNLRNIWHVFSGEC 208
           + N R++WH F G C
Sbjct: 126 IHNYRDLWHSFKGMC 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,300
Number of Sequences: 5004
Number of extensions: 50594
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)