Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K01
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0216 - 14954047-14956098 34 0.072
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 30 1.6
04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864 29 2.7
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 29 3.6
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 28 4.8
04_03_0615 + 18048787-18048865,18048897-18049753 27 8.3
03_03_0067 + 14230211-14231506 27 8.3
01_07_0192 - 41888998-41890632 27 8.3
>11_04_0216 - 14954047-14956098
Length = 683
Score = 34.3 bits (75), Expect = 0.072
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 483 FGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLKEIQFSPQRVV 346
FG GF G+ E+R+E P VE+++C K + +R++
Sbjct: 249 FGSSSDGDGFSDGVEEKRLECDPVSVEIKKCEPPAKSLSSVSRRIL 294
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 291 LEHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVME 175
LE + HSG + +V L N W+++ F + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455
>04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864
Length = 203
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 241 QVPNFNTVGAGVDYMFKDKIGASATAAHTDVFDRNDYSLGGKLNLFKTPTTSLDFNAG 414
+ P + A D + + A+A A VFD D+ +GGK + PT + D + G
Sbjct: 34 EAPGGGALLAAGDDVTAANLFAAAVATEGPVFDMPDFKMGGKKSDDAAPTDAGDEDGG 91
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1
Query: 178 HNDNHDFSAKAFATKNMPNI--PQVPNFNTVGAGVDYMFKDKIGASATAAHTDVFDRNDY 351
+ D+ DF+ + F+T PN+ P VP + + A + + +AT +HT D+ D
Sbjct: 263 NEDDDDFNPRGFSTSTTPNVSTPAVPEVD-LFADAAFQSANAPLEAATVSHTQ--DKIDL 319
Query: 352 SLGGKLNLFKTPTTSLDFN 408
G+L+ + T+ +F+
Sbjct: 320 -FAGRLSSADSFTSDTEFS 337
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 309 RCTNLVLEHVVHSGTDSVEVRN--LRNIWHVFSGECF 205
R NLV+++V HSG + +++ LRN+ FS CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>04_03_0615 + 18048787-18048865,18048897-18049753
Length = 311
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 404 STPVGRSSIRLS--LSPRGNPALVSRFPNISKLK 499
S P R++IRL L+ P L SRFPN+ K++
Sbjct: 24 SFPEQRATIRLDCGLATEAFPTLCSRFPNLLKVE 57
>03_03_0067 + 14230211-14231506
Length = 431
Score = 27.5 bits (58), Expect = 8.3
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Frame = -3
Query: 438 ERRIELLPTGVEVQRCGRSLKEIQFSPQRVVVTIKDIGVSGGRRCTNLVLEHVVHSGTDS 259
ERRI+ G + R+ + +FS V + GV+GG ++ + +++
Sbjct: 315 ERRIDYSRHGAGSRNVARTFRN-KFSAATTAVEVLPDGVNGGGGEEEIMFQFLINQFDMR 373
Query: 258 VEVRNL-RNIWH----VFSGECFGTEIVVVVMEEIYFAGSRHFVTE 136
V N+ R W + T ++ E+ F GS HFV E
Sbjct: 374 EAVYNVGRGAWRWRRILPPTRRVMTHKECMLPREVSFGGSAHFVEE 419
>01_07_0192 - 41888998-41890632
Length = 544
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = -3
Query: 315 GRRCTNLVLEHVVHSGTDSVEVRNLRN-IWHVFSGECFGTEIVVVVMEEIYFAGSRHFVT 139
G C E + G + V V R ++H C G E+ V M+ + A R F
Sbjct: 441 GEDCREFRPERWLSDGGEFVAVDAARYPVFHAGPRACLGREMAYVQMKAVAAAVIRRFAV 500
Query: 138 EP 133
EP
Sbjct: 501 EP 502
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,848,047
Number of Sequences: 37544
Number of extensions: 345516
Number of successful extensions: 877
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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