Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_K01
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              30   1.2  
SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)              28   6.4  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 103 GATLTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNMPNIPQ-VPNFNTVGAG 273
           G+T   T IPG G    + GK ++  N  H  S  A         P  VP   T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379


>SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)
          Length = 528

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = -3

Query: 537 VSNNYLKF*INDCFNLEIFGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLKEIQFSP 358
           V ++YLK   ++  N+E+FG  E    F RG+  +++E      E+ +   +L E   S 
Sbjct: 411 VIDSYLKIVKSESTNVEVFGWEE----FERGVENKKLE------ELLKGKGNLLEKNMST 460

Query: 357 QRVVVTIKDIGVS 319
           Q +V  +K +  S
Sbjct: 461 QEIVWKVKAVAFS 473


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 136 FGDKMTAAGKVNLFH---NDNHDFSAKAFATKNMPNIPQVPNFNTV 264
           FGDK   A  +  FH   ND  D S  +  T+ + ++  +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = -3

Query: 477 KRETSAGFPRGLNERRIELLPTGVEVQRCGRSLKEIQFSPQRVVVTIKDIGVSGGRRCT 301
           K E  A  P  L  R    L   + +  CG     IQ S  R V T+    VS G +CT
Sbjct: 304 KTEIQASHPTALIRRSCICLMRALALT-CGLHADSIQTSQVRTVSTLLHKLVSAGTKCT 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,413
Number of Sequences: 59808
Number of extensions: 388940
Number of successful extensions: 978
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)