Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_K01
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46671-5|AAA85750.2| 147|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z99288-10|CAB16552.2| 338|Caenorhabditis elegans Hypothetical p... 29 3.2
Z81483-7|CAB03964.2| 338|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr... 29 3.2
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein. 29 3.2
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 28 4.2
Z49132-7|CAA88986.1| 403|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z82267-3|CAB05191.1| 186|Caenorhabditis elegans Hypothetical pr... 27 9.8
AC084197-6|AAO38572.1| 328|Caenorhabditis elegans Serpentine re... 27 9.8
>U46671-5|AAA85750.2| 147|Caenorhabditis elegans Hypothetical
protein C14E2.5 protein.
Length = 147
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/75 (25%), Positives = 29/75 (38%)
Frame = +1
Query: 115 TKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKD 294
T IP F + A K LF +N D + + N + NF + + Y +D
Sbjct: 10 TAMEIPTFARALNAEPKSQLFLKENQDSQPRLLVSTAEKNGSVISNFKS--SWNHYYIED 67
Query: 295 KIGASATAAHTDVFD 339
+ + T VFD
Sbjct: 68 NSSSDENISQTTVFD 82
>Z99288-10|CAB16552.2| 338|Caenorhabditis elegans Hypothetical
protein ZK262.11 protein.
Length = 338
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 257 LKFGT*GIFGMFLVANALALK-SWLSLWKRFTLP 159
L+F T GI G+F + K SW+ LWK+F P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141
>Z81483-7|CAB03964.2| 338|Caenorhabditis elegans Hypothetical
protein C43D7.6 protein.
Length = 338
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 257 LKFGT*GIFGMFLVANALALK-SWLSLWKRFTLP 159
L+F T GI G+F + K SW+ LWK+F P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141
>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 294 VLEHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVMEEIYFAGSRHFVTEPRDMS 121
V+ + H T+ VRNL+ ++HVF ++IV + + FA + + MS
Sbjct: 746 VINELFH--TERTHVRNLKILYHVFYKPIVTSKIVTEELANLLFANLEELLNLHKSMS 801
>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 294 VLEHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVMEEIYFAGSRHFVTEPRDMS 121
V+ + H T+ VRNL+ ++HVF ++IV + + FA + + MS
Sbjct: 746 VINELFH--TERTHVRNLKILYHVFYKPIVTSKIVTEELANLLFANLEELLNLHKSMS 801
>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
Length = 1293
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 294 VLEHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVMEEIYFAGSRHFVTEPRDMS 121
V+ + H T+ VRNL+ ++HVF ++IV + + FA + + MS
Sbjct: 699 VINELFH--TERTHVRNLKILYHVFYKPIVTSKIVTEELANLLFANLEELLNLHKSMS 754
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 198 QCQSIRH*KHAKYSSSSELQHCRCRSGLHVQGQDWC 305
QCQ + AKY Q+C+ + H Q WC
Sbjct: 25 QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59
>Z49132-7|CAA88986.1| 403|Caenorhabditis elegans Hypothetical
protein ZK666.7 protein.
Length = 403
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 37 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 138
L +MK+ A A +AY DNVNG L++ PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215
>Z82267-3|CAB05191.1| 186|Caenorhabditis elegans Hypothetical
protein F38C2.5 protein.
Length = 186
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 229 PNIPQVPNFNTVGAGVDYMFKDKIGASATAAHTD 330
P +PQ ++ +G+ F D GASA+++ TD
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTD 184
>AC084197-6|AAO38572.1| 328|Caenorhabditis elegans Serpentine
receptor, class v protein25 protein.
Length = 328
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 575 IHYVKKMITLKLWFLIITLSFKLMTV 498
++Y+ ITL ++FL+ T F+L +
Sbjct: 16 VYYITSAITLPIYFLVFTCLFRLRCI 41
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,461,720
Number of Sequences: 27780
Number of extensions: 291240
Number of successful extensions: 711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -