Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_J23
(280 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 27 2.8
01_06_0233 + 27735881-27736238,27736337-27736453,27736559-277367... 27 2.8
08_01_0779 - 7553278-7553631,7553765-7553977,7554132-7554617,755... 26 3.7
06_03_0298 - 19272257-19273714 26 3.7
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 26 4.9
06_03_0878 + 25606788-25606926,25607205-25607279,25607362-256074... 26 4.9
04_01_0160 + 1830671-1830779,1830898-1830971,1831374-1831671,183... 26 4.9
02_04_0617 - 24422922-24422927,24423063-24423134,24423223-244233... 26 4.9
02_03_0253 + 16905723-16907105 26 4.9
11_06_0420 + 23326905-23327231 25 6.5
09_04_0071 - 14313737-14315091,14316131-14316207,14316604-143167... 25 6.5
05_05_0125 - 22561972-22562028,22562318-22562416,22562496-225626... 25 6.5
09_02_0234 - 6116931-6117052,6117549-6118369,6118573-6118601,611... 25 8.6
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 25 8.6
01_06_0568 + 30305008-30305170,30305277-30305341,30306599-303067... 25 8.6
01_01_1091 - 8585517-8585846 25 8.6
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 116 FKCGSSLISEKFVLTAAHCSSASERDTTIADPIPKIVRLGD 238
F +I E F A + ++ +++ +IADP P+ V L D
Sbjct: 458 FHVNEEMIEELFGYGAGNQNNVKDKEISIADPSPQHVSLLD 498
>01_06_0233 +
27735881-27736238,27736337-27736453,27736559-27736713,
27736796-27736870,27736934-27737242,27737431-27737742,
27737844-27738218
Length = 566
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 143 EKFVLTAAHCSSASERDTTIADPIPKIVRLGDKNILDAGSSGDI 274
+K VL+ +H S A ++ D +P +V KN+ D+G +I
Sbjct: 79 QKRVLSRSHGSKAKPLGGSV-DHLPPVVPPSSKNVRDSGPPSEI 121
>08_01_0779 -
7553278-7553631,7553765-7553977,7554132-7554617,
7554729-7554796,7554918-7555215,7555288-7555364,
7555703-7555874,7555951-7556021,7557371-7557392
Length = 586
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 34 NRRSRYNTWGIPSHGSHRMESVYR 105
+R +YN W + G+ +++S YR
Sbjct: 359 HRSIKYNVWASTASGNRKLDSAYR 382
>06_03_0298 - 19272257-19273714
Length = 485
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 240 LSPSLTILGIGSAIVVSLSEALEQWAA 160
L+PSL+ LGI + + EA +W A
Sbjct: 316 LAPSLSFLGIPNMVTTRFFEAQARWVA 342
>07_03_1591 + 27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 111 HVPIDAFHPMAPM*GNSPGVVSRPPIAKCGSL 16
H +D FH A + G PG S PP+ + L
Sbjct: 1145 HGHLDVFHNNAGIAGRLPGRRSPPPVKRSSGL 1176
>06_03_0878 +
25606788-25606926,25607205-25607279,25607362-25607426,
25607504-25607606,25607712-25607762,25608271-25608424,
25608781-25608925,25609039-25609144,25609267-25609415
Length = 328
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 83 IGWKASIGTWIFKCGSSLISEKFVLTAAHCSSASERDTTIA 205
+ WK S +FKC SS S K++ + +A + T A
Sbjct: 177 LDWKMSWPPPVFKCDSSDPSSKYLWYTSEIEAAEKATTLFA 217
>04_01_0160 +
1830671-1830779,1830898-1830971,1831374-1831671,
1831900-1832867,1833504-1833716,1834034-1834237,
1835063-1835104
Length = 635
Score = 25.8 bits (54), Expect = 4.9
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = +1
Query: 46 RYNTWGIPSHGSHRMESVYRYMDI 117
+YN W HG++++++ +R I
Sbjct: 444 KYNVWASTPHGNNKLDAAFREAQI 467
>02_04_0617 -
24422922-24422927,24423063-24423134,24423223-24423324,
24423443-24423559,24423626-24423764,24423857-24423963,
24424052-24424161,24425749-24425882,24426005-24426145,
24426241-24426440,24426781-24426941,24427753-24427897
Length = 477
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = -2
Query: 240 LSPSLTILGIGSAIVVSLSEALEQWAAVRTNFSLISELPHLNIHVPIDAFHPMAPM 73
LS TI ++ E LE W L P LNI +P F+ P+
Sbjct: 218 LSAPGTIFSTKFGPIIDTQEGLEFWRGCYKGVRLSQFGPGLNIDIPAAPFYKPLPV 273
>02_03_0253 + 16905723-16907105
Length = 460
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 273 ISPLEPASKMFL---SPSLTILGIGSAIVVSLSEAL 175
+ P+EP ++FL +P + G+ S + SLS AL
Sbjct: 39 LKPVEPVERLFLYRLAPGAAVHGVLSHLADSLSRAL 74
>11_06_0420 + 23326905-23327231
Length = 108
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 109 CTYRRFPSYGSHVR 68
C Y R P+YGS++R
Sbjct: 76 CAYARSPNYGSYIR 89
>09_04_0071 -
14313737-14315091,14316131-14316207,14316604-14316725,
14316838-14316924,14317000-14317066,14317135-14317290,
14318689-14318837
Length = 670
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 135 SELPHLNIHVPIDAFHPMAPM-*GNSPGVVSRPPI 34
S P+L I VP DA H M P+ + PG+ P I
Sbjct: 626 SPAPYLAI-VPFDAAHDMVPLQSADPPGLTDDPTI 659
>05_05_0125 -
22561972-22562028,22562318-22562416,22562496-22562624,
22563312-22563355,22563570-22563642,22563791-22563877,
22563985-22564069,22565460-22565533,22565612-22566192,
22566275-22568270
Length = 1074
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 17 NEPHFAIGGRDTTPGEFPHMGAIGWKASI 103
+EP F +G +++ G+F G + W+A I
Sbjct: 201 SEPQFHLGPGESSSGDFSRSGEV-WEAGI 228
>09_02_0234 -
6116931-6117052,6117549-6118369,6118573-6118601,
6118711-6119020,6119469-6119476,6120104-6120232,
6120341-6120445
Length = 507
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +2
Query: 71 HMGAIGWKASIGTWIFKCGS 130
H +GW + WI CG+
Sbjct: 139 HRARVGWPVRLLVWILTCGA 158
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 59 GEFPHMGAIGWKASIGTWIFKCGSSL 136
G + GA WKA IG W+ C + L
Sbjct: 72 GAVTYRGA-PWKAEIGRWLAGCDAGL 96
>01_06_0568 +
30305008-30305170,30305277-30305341,30306599-30306769,
30307409-30307978,30308085-30308444,30308496-30308774
Length = 535
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 77 GAIGWKASIGTWIFKCGSSLISEKFVLTAAHCSSASERDTTIADPI 214
G + W+A +G W++ GS E+F+ R+ ++ DP+
Sbjct: 55 GCLDWRAGLGDWLYG-GSGDAMEEFMKEWRR----GRREASLLDPV 95
>01_01_1091 - 8585517-8585846
Length = 109
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 104 GTWIFKCGSSLISEKFVLTAAHCSSASERDTTIADPIPKIV 226
G W+FK G + EK TA + R + P ++V
Sbjct: 3 GVWVFKNGVVRLVEKQQATAGTAVAGGRRKALVHTPSGQVV 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,701,338
Number of Sequences: 37544
Number of extensions: 163643
Number of successful extensions: 410
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -