Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J23
         (280 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    43   3e-05
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    40   2e-04
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    31   0.092
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    29   0.49 
Z50044-8|CAA90360.1|  591|Caenorhabditis elegans Hypothetical pr...    27   1.5  
Z29561-5|CAA82668.1|  395|Caenorhabditis elegans Hypothetical pr...    27   2.0  
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    26   3.5  
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    26   3.5  
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...    26   3.5  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    26   4.6  
Z50109-9|CAA90440.2|  367|Caenorhabditis elegans Hypothetical pr...    26   4.6  
Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical pr...    25   8.0  
Z68014-7|CAI79182.1|  122|Caenorhabditis elegans Hypothetical pr...    25   8.0  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 21/52 (40%), Positives = 30/52 (57%)
 Frame = +2

Query: 35  IGGRDTTPGEFPHMGAIGWKASIGTWIFKCGSSLISEKFVLTAAHCSSASER 190
           +GG +T PG FP   A+  KA   T    CG+S++ +  ++TAAHC    ER
Sbjct: 28  VGGFETVPGAFPWTAALRNKA---TKAHHCGASILDKTHLITAAHCFEEDER 76


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = +2

Query: 26  HFAIGGRDTTPGEFPHMGAIGWKASIGTWIFKCGSSLISEKFVLTAAHCSSASERDTT 199
           H  IGG +++P  +P    +   + +G    +CG SLI   FVLTAAHC +   R T+
Sbjct: 56  HRLIGGSESSPHSWPW--TVQLLSRLGH--HRCGGSLIDPNFVLTAAHCFAKDRRPTS 109


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.092
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 92  KASIGTWIFKCGSSLISEKFVLTAAHC 172
           KA  G +   CG +LI+ K VLTAAHC
Sbjct: 52  KARKGDFEVICGGTLITLKHVLTAAHC 78


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 107 TWIFKCGSSLISEKFVLTAAHCSS 178
           TW   C  +L S + +LTA HC++
Sbjct: 70  TWSKHCSGTLTSPRHILTATHCAA 93


>Z50044-8|CAA90360.1|  591|Caenorhabditis elegans Hypothetical
           protein F22B5.9 protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 144 SLISELPHLNIHVPIDAFHPMAPM*GNSPGVV-SRPPI 34
           +L S   HL  ++PI   HP+ P+  +  GVV S PPI
Sbjct: 200 TLYSTDSHLKAYLPIIQNHPVYPVIYDKNGVVCSMPPI 237


>Z29561-5|CAA82668.1|  395|Caenorhabditis elegans Hypothetical
           protein R10E12.2 protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 50  TTPGEFPHMGAIGWKASIGTWIFKCGSSLISE 145
           T  G+ P   A G +A    W+F   SSLIS+
Sbjct: 175 TIIGQEPGSEATGLRAGSAAWLFGSSSSLISD 206


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +2

Query: 122 CGSSLISEKFVLTAAHCS 175
           CG+++I + +++TAAHC+
Sbjct: 66  CGATVIDDFWLVTAAHCA 83


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 176 SASERDTTIADPIPKIVRLGDKNILDAGSSGDIP 277
           S S R   I  P  K+   GD++ LD  ++GDIP
Sbjct: 19  SGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIP 52


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 176 SASERDTTIADPIPKIVRLGDKNILDAGSSGDIP 277
           S S R   I  P  K+   GD++ LD  ++GDIP
Sbjct: 49  SGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIP 82


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 122 CGSSLISEKFVLTAAHC 172
           CG  LI+   V+T+AHC
Sbjct: 46  CGGVLIAPSIVITSAHC 62


>Z50109-9|CAA90440.2|  367|Caenorhabditis elegans Hypothetical
           protein C09H10.9 protein.
          Length = 367

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 57  GVVSRPPIAKCG 22
           G++S+PPI KCG
Sbjct: 326 GILSKPPIVKCG 337


>Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical
           protein T01C3.8 protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 85  YGSHVREFPRCCISTADCK 29
           + SH + FPRC I T D K
Sbjct: 127 FRSHRKPFPRCIIITTDGK 145


>Z68014-7|CAI79182.1|  122|Caenorhabditis elegans Hypothetical
           protein W04G3.10 protein.
          Length = 122

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 80  AIGWKASIGTWIFKCGSSLISEKFVLTAAHCSSASE 187
           A  +  +IG W   CGS  ISE   L  A  SS  E
Sbjct: 9   AFNFVFTIGAW--DCGSGFISEGLALLLASPSSDKE 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,182,444
Number of Sequences: 27780
Number of extensions: 135629
Number of successful extensions: 302
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)