Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_J23
(280 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58190.2 68418.m07284 expressed protein contains Pfam profile... 27 1.4
At5g58190.1 68418.m07283 expressed protein contains Pfam profile... 27 1.4
At1g74910.2 68414.m08686 ADP-glucose pyrophosphorylase family pr... 27 1.9
At1g74910.1 68414.m08685 ADP-glucose pyrophosphorylase family pr... 27 1.9
At2g43500.1 68415.m05405 RWP-RK domain-containing protein low si... 27 2.4
At5g16960.1 68418.m01987 NADP-dependent oxidoreductase, putative... 26 4.3
At3g22960.1 68416.m02895 pyruvate kinase, putative similar to py... 26 4.3
At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote... 25 7.5
At5g26970.1 68418.m03218 hypothetical protein 25 7.5
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 25 7.5
At1g77630.1 68414.m09038 peptidoglycan-binding LysM domain-conta... 25 7.5
At1g48110.1 68414.m05369 expressed protein contains Pfam profile... 25 7.5
At3g44830.1 68416.m04830 lecithin:cholesterol acyltransferase fa... 25 9.9
At3g26950.1 68416.m03374 expressed protein 25 9.9
At3g12750.1 68416.m01592 zinc transporter (ZIP1) identical to pu... 25 9.9
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 25 9.9
At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family pr... 25 9.9
At1g51890.1 68414.m05849 leucine-rich repeat protein kinase, put... 25 9.9
>At5g58190.2 68418.m07284 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 528
Score = 27.5 bits (58), Expect = 1.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 34 NRRSRYNTWGIPSHGSHRMESVYR 105
+R +YN W HG+ ++++ YR
Sbjct: 339 HRSIKYNVWASTPHGNKKLDTAYR 362
>At5g58190.1 68418.m07283 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 527
Score = 27.5 bits (58), Expect = 1.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 34 NRRSRYNTWGIPSHGSHRMESVYR 105
+R +YN W HG+ ++++ YR
Sbjct: 338 HRSIKYNVWASTPHGNKKLDTAYR 361
>At1g74910.2 68414.m08686 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 415
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 83 IGWKASIGTWIFKCGSSLISEKFVLTAAHCSSASERDTTIADPI 214
+GWK+SIG W + + K +T S A E + + I
Sbjct: 355 VGWKSSIGRWSRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSSI 398
>At1g74910.1 68414.m08685 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 415
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 83 IGWKASIGTWIFKCGSSLISEKFVLTAAHCSSASERDTTIADPI 214
+GWK+SIG W + + K +T S A E + + I
Sbjct: 355 VGWKSSIGRWSRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSSI 398
>At2g43500.1 68415.m05405 RWP-RK domain-containing protein low
similarity to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 947
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 270 SPLEPASKMFLSPSLTILGIGSAIVVSLSEALEQWAAVRTNFSLISE 130
S +EP M S S + G G+ + S S ++E W +RT+ S SE
Sbjct: 796 SIVEPNQSMSCSISDSSNGSGAVLRGSSSTSMEDWNQMRTHNSNSSE 842
>At5g16960.1 68418.m01987 NADP-dependent oxidoreductase, putative
similar to probable NADP-dependent oxidoreductase
(zeta-crystallin homolog) P1 [SP|Q39172][gi:886428] and
P2 [SP|Q39173][gi:886430], Arabidopsis thaliana
Length = 346
Score = 25.8 bits (54), Expect = 4.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = -2
Query: 267 PLEPASKMFLSPSLTILGIG-SAIVVSLSEALEQ----WAAVR-TNFSLISELPHLNIHV 106
PL PA+ +P I G G S ++ S E+ W AV +S+I+ +P+L+ +
Sbjct: 64 PLSPATAQSFTPGKPISGFGVSKVIDSGHSDYEEGDLIWGAVGWEEYSVITPIPNLHFKI 123
>At3g22960.1 68416.m02895 pyruvate kinase, putative similar to
pyruvate kinase isozyme A, chloroplast precursor
[Ricinus communis] SWISS-PROT:Q43117
Length = 596
Score = 25.8 bits (54), Expect = 4.3
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 20 EPHFAIGGRDTTPGEFPHMGAIGWKASIGTWIFKCGSSLISEKFVLTA-AHCSSASERDT 196
E FA+ T G HMG +G +AS + E + T A SS ER
Sbjct: 171 EKGFAVAIMMDTEGSEIHMGDLGGEAS--------AKAEDGEVWTFTVRAFDSSRPERTI 222
Query: 197 TIA-DPIPKIVRLGDKNILDAG 259
+++ D + VR+GD+ ++D G
Sbjct: 223 SVSYDGFAEDVRVGDELLVDGG 244
>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor-like
protein kinase
Length = 680
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 183 EALEQWAAVRTNFSLISELPHLNI 112
+ LE W RTNF + P +NI
Sbjct: 43 QQLESWYDHRTNFCYLQATPSMNI 66
>At5g26970.1 68418.m03218 hypothetical protein
Length = 108
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 149 FVLTAAHCSSASERDTTIADPIPKIVRL 232
FV +H SSA E+ + D PK RL
Sbjct: 8 FVSIQSHVSSAGEKPIHVLDENPKFSRL 35
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 47 DTTPGEFPHMGAIGWKASIGTWIFKCGSS 133
D G F G +G ++S G W G+S
Sbjct: 669 DAGTGSFQPFGMLGTESSTGDWAIGAGTS 697
>At1g77630.1 68414.m09038 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 423
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +2
Query: 32 AIGGRDTTPGEFPHMGAIGWKASIGTWIFKCGSSLISEKFVLTAAHCSSAS 184
A+G D PG+ + + ++ + G + + + LTA HC S
Sbjct: 202 AMGAPDINPGDILAVPLLACSSNFPKYATDYGLIIPNGSYALTAGHCVQCS 252
>At1g48110.1 68414.m05369 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 639
Score = 25.0 bits (52), Expect = 7.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 46 RYNTWGIPSHGSHRMESVY 102
+YN W HG+ +++S Y
Sbjct: 339 KYNVWSSTLHGNKKLQSAY 357
>At3g44830.1 68416.m04830 lecithin:cholesterol acyltransferase
family protein / LACT family protein similar to
lecithin:cholesterol acyltransferase [Rattus norvegicus]
GI:2306762; contains Pfam profile PF02450:
Lecithin:cholesterol acyltransferase
(phosphatidylcholine-sterol acyltransferase)
Length = 665
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 118 KYPCTYRRFPSYGSHVREFPRCCISTADCK 29
K P Y R S+G E P +ST + K
Sbjct: 386 KEPAKYGRIVSFGKRASELPSSQLSTLNVK 415
>At3g26950.1 68416.m03374 expressed protein
Length = 548
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 240 LSPSLTILGIGSAIVVSLSEALEQWAAVRTNFSLISELPHLN 115
L ++ LGI + VV +S+ ++TN S I+E+ H +
Sbjct: 324 LGKAINRLGIPNPRVVIVSDTPSVVKIIKTNISTIAEVLHFD 365
>At3g12750.1 68416.m01592 zinc transporter (ZIP1) identical to
putative zinc transporter GB:AAC24197 from [Arabidopsis
thaliana], ( Proc. Natl. Acad. Sci. U.S.A. 95 (12),
7220-7224 (1998)); member of the Zinc (Zn2+)-Iron (Fe2+)
permease (ZIP) family, PMID:11500563
Length = 355
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 47 DTTPGEFPHMGAIGWKASIGT 109
DTT G+FP G + +++GT
Sbjct: 119 DTTAGKFPFAGFVAMLSAMGT 139
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 111 HVPIDAFHPMAPM*GNSPGVVSRPPIAKC 25
H P+DA P + +S G+ RP +A+C
Sbjct: 306 HHPVDAVPPKTGIVLSSIGLPLRPGVAQC 334
>At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 406
Score = 24.6 bits (51), Expect = 9.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 83 IGWKASIGTW 112
IGWK+SIG W
Sbjct: 346 IGWKSSIGRW 355
>At1g51890.1 68414.m05849 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 888
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 176 SASERDTTIADPIPKIVRLGDKNILDAGSSGDIPY 280
S S TI I K+ L + ++ + SGDIP+
Sbjct: 406 SGSNLSGTITSDISKLTHLRELDLSNNDLSGDIPF 440
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,878,287
Number of Sequences: 28952
Number of extensions: 129043
Number of successful extensions: 361
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -