Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J22
         (478 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79720.1 68414.m09298 aspartyl protease family protein contai...    29   2.2  
At4g35640.1 68417.m05061 serine O-acetyltransferase, putative si...    27   6.6  

>At1g79720.1 68414.m09298 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 484

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 35  VKMKVAPVLFVVLLSLMCVVQCKDLIVGTSFNNRLIWQEKADYNA 169
           + + +AP+L V L  L CVV   D     S +N  IW  K  Y A
Sbjct: 7   LNLSLAPLLLVFLFLLSCVVHGVDEKKILSVHNN-IWSPKKSYEA 50


>At4g35640.1 68417.m05061 serine O-acetyltransferase, putative
           similar to serine acetyltransferase, Arabidopsis
           thaliana, GI:905391; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 355

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 140 IWQEKADYNAIPLKKRVKEVFFSD--PGQQIIKGVIARDLDH-TDAIASITA 286
           +W++     A+ L+ RV EVF  D  P  +I KG++   LDH T  +   TA
Sbjct: 184 LWKQGRKLLALALQSRVSEVFGIDIHPAARIGKGIL---LDHGTGVVIGETA 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,822,268
Number of Sequences: 28952
Number of extensions: 200049
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)