Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_J19
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0407 - 3613417-3613506,3613603-3613713,3613789-3613857,361... 31 0.48
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 30 1.5
02_04_0645 + 24703102-24704598 30 1.5
04_01_0446 - 5815231-5816202 29 1.9
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 29 2.6
11_04_0260 - 15509658-15509780,15510092-15510161,15510265-155104... 29 3.4
04_04_0470 + 25474029-25475525 29 3.4
05_03_0618 - 16262826-16263097,16263111-16263183 28 4.5
02_04_0646 + 24710348-24711838 28 4.5
06_03_0905 + 25843547-25844314 28 5.9
03_05_0585 + 25869955-25869984,25870092-25870182,25870402-258705... 28 5.9
01_06_1682 - 39130696-39131705,39132355-39132583 28 5.9
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 27 7.8
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 27 7.8
09_02_0414 - 8825575-8826654,8826737-8827144 27 7.8
05_04_0235 + 19291204-19291769,19291860-19292250 27 7.8
>08_01_0407 -
3613417-3613506,3613603-3613713,3613789-3613857,
3613936-3614091,3614156-3614222,3614375-3614470,
3614976-3615142
Length = 251
Score = 31.5 bits (68), Expect = 0.48
Identities = 20/74 (27%), Positives = 38/74 (51%)
Frame = +3
Query: 342 TIGYNRKSIGISFVGNYDNQEATNQQLEAVRSLLQCGVKQGHLTSNYKVVGHRPVLATES 521
T GY+RK +G+S+V + Q N + +R ++ ++ H S K+ G PV E+
Sbjct: 148 TRGYSRKDLGVSYV--KEKQLRVNMGISKLREKVKEHQEKFH--SAAKIAGSNPVEWMEN 203
Query: 522 PGRYLYNQIRRWPE 563
R++ + ++ E
Sbjct: 204 ADRWIVGFLEKFEE 217
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 102 DWGGLS-PVHIEYLPRPISLVIIQHTVTPTCETNEACMVTMRS--LQDNHMDNLK 257
+WG + P I +LP I LVI + T P N ++T+RS L +N + N++
Sbjct: 410 EWGSVCIPPDIVHLPHLIHLVIPEGTGLPDGIGNLKSLITLRSFDLGENSLHNIR 464
>02_04_0645 + 24703102-24704598
Length = 498
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 316 LDGFTSERTRSVTTGNLSGSASSVTTTI-KRQRTSNWKL*DHC 441
+DG S R+ T +L+GS +++TT KR T +W + D C
Sbjct: 271 IDGQWSAVGRTAVTTSLAGSVAALTTLYGKRWLTGHWNVTDVC 313
>04_01_0446 - 5815231-5816202
Length = 323
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 197 ERSMHGDDAKFTRQSYG*FEILGHRDEFRRRWQR-ESLRRFWM 322
+R GD ++R G + + RRRW+R ES+RR+WM
Sbjct: 262 QRWSGGDGLGWSRSGSGAWRRWMGMEPERRRWKRAESMRRWWM 304
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 189 CETNEACMVTMRSLQDNHMDNLKYWDIGMN 278
C M+ R +Q+NH D WD G N
Sbjct: 868 CTAENLRMILHRDMQNNHPDANSMWDFGWN 897
>11_04_0260 -
15509658-15509780,15510092-15510161,15510265-15510438,
15511098-15511528
Length = 265
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +3
Query: 138 LPRPISLVIIQHTVTPTCETNE-ACMVTMR-SLQDNHMDNLKYWDIGMNFVVGGNGKVYE 311
LP P L+++Q T+ + A V R S + +D+ Y + VGG G +
Sbjct: 5 LPLPALLLVVQPTMAVASHGGDGAAFVAARPSSVHSSLDDSAYGILNDGEGVGGGGGGEQ 64
Query: 312 GSGWLHVGAHTIGY 353
G GW + + Y
Sbjct: 65 GGGWANGSGYESRY 78
>04_04_0470 + 25474029-25475525
Length = 498
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 316 LDGFTSERTRSVTTGNLSGSASSVTTTI-KRQRTSNWKL*DHC 441
++G S R+ T L+GS +++TT KR +T +W + D C
Sbjct: 269 INGQWSGVGRTAVTTTLAGSVAALTTLFGKRLQTGHWNVVDVC 311
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 287 RWQRESLRRFWMASRRSAHDR 349
RW R + RR W+ RRS H R
Sbjct: 8 RWSRMARRRRWLKRRRSGHCR 28
>02_04_0646 + 24710348-24711838
Length = 496
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 343 RSVTTGNLSGSASSVTTTI-KRQRTSNWKL*DHC 441
R+ T L+GS +++TT KR +T +W + D C
Sbjct: 278 RTAVTTTLAGSTAALTTLFGKRLQTGHWNVIDVC 311
>06_03_0905 + 25843547-25844314
Length = 255
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 349 PIVCAPT*SHPEPS*TFPLPPTT 281
P+V P ++P P T+P PP T
Sbjct: 130 PVVVGPPVTYPTPPVTYPTPPVT 152
>03_05_0585 +
25869955-25869984,25870092-25870182,25870402-25870551,
25870687-25870774,25871096-25871590,25871755-25871890,
25872117-25872310,25872421-25872529,25872685-25872796,
25873260-25873339,25873503-25873607
Length = 529
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +3
Query: 42 FTIFLSWKSVRADCGVVSKKDWGGLSPVHIEYLPRPISLVIIQHTVTPTCETNEACMVTM 221
+ I LS++SV+A +V +W L + + + + + HT TPT T+ + +
Sbjct: 405 YRIALSYRSVKA---LVEMHNWKQL--LEKDQAGKKGGFIFLPHTNTPTILTDTQATICV 459
Query: 222 RSLQDNHMDNL 254
R + H+ ++
Sbjct: 460 RMRSEEHLHDI 470
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -2
Query: 325 SHPEPS*TF--PLPPTTKFIPMSQYF 254
+HP P + P+PPT K++P YF
Sbjct: 257 NHPPPPYGYNSPIPPTNKYLPPPYYF 282
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 169 WIITRLIGRGKYSICTGDSPP--QSFLETTPQSARTLFQLKNI 47
W + R + + + +C GD P +S TP + +L+++
Sbjct: 668 WYVVRFVSKHNHPLCKGDQVPFLRSHRRITPAEQAKMVELRDV 710
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 72 RADCGVVSKKDWGGLSPVHIEYLPRPISL 158
R++CG ++ ++GG +P P P+ L
Sbjct: 265 RSECGFAARSEYGGTAPSEYAAAPLPLPL 293
>09_02_0414 - 8825575-8826654,8826737-8827144
Length = 495
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 325 SHPEPS*TFPLPPTTKFIPMSQYFKLSI 242
SHP + FP PP + P SQ F+ ++
Sbjct: 39 SHPAYAMNFPFPPFPHYPPYSQNFQYAV 66
>05_04_0235 + 19291204-19291769,19291860-19292250
Length = 318
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 327 EAIQNLRKLSRCHLRRNSSRCPNISNYPYDCLVNFASS 214
EA+ + + L RN + CP Y YD LV A++
Sbjct: 71 EAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAA 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,743,569
Number of Sequences: 37544
Number of extensions: 367579
Number of successful extensions: 1003
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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