Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J19
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.1)            29   3.5  
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  28   4.6  
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_29437| Best HMM Match : POPLD (HMM E-Value=3.9)                     28   6.1  

>SB_32931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.1)
          Length = 815

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = -3

Query: 276 SSRCPNISNYPYDCLVNFASSPCMLRSSHRSE*RCAGLSPG*SAEANTLYAP 121
           SSR P+I  Y Y CLV   S+  +LR   +       L PG S   N +YAP
Sbjct: 46  SSRLPDIPGYLYTCLVTAGSADKLLRVRVKKR----ALLPG-SLHVN-IYAP 91


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
 Frame = +3

Query: 150 ISLVIIQHTVTPTCETNEACMVTMRSLQDN---HMDNLKYWDIGMNFVVGGN-GKVYEGS 317
           +++ I  + + P+   N +C+    SL DN   H  N     +G     GGN   + +  
Sbjct: 304 VNVSIHDNHLNPSSYDNHSCLANQSSLSDNQSSHGGNHSSL-VGNQSSHGGNHSSLDDNQ 362

Query: 318 GWLHVGAHTIGYNRKSIGISFVGNYDNQEAT-NQQLEAVRSLLQCGVKQGHLTSNYKVVG 494
             L      +G N+ S G    G  DNQ +  N Q          G  Q  L  N  ++G
Sbjct: 363 SSLGGNQSILGDNQSSHGNEKSGLGDNQSSLGNDQSSHGNDQSSHGNNQSSLGGNQSILG 422


>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2143

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 413  VRCLLIVVVTDEADPDRFPVVTDRVRSDVK---PSRTFVNFPVATYDEIHPDVPI 258
            VR  L V+ TD    D   + TDRVR+D++     R   +  V + D +  D+ +
Sbjct: 1243 VRTDLRVISTDRVRTDLHVISTDRVRTDLRVTSTDRVRTDLRVTSTDRVRADLHV 1297



 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 413  VRCLLIVVVTDEADPDRFPVVTDRVRSD---VKPSRTFVNFPVATYDEIHPDVPI 258
            VR  L V+ TD    D   + TDRVR+D   +   R   +  V + D +  D+ +
Sbjct: 895  VRTYLHVMSTDRVRTDLRVISTDRVRTDLRVISTDRVRTDLRVTSTDRVRTDLRV 949



 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -1

Query: 413  VRCLLIVVVTDEADPDRFPVVTDRVRSD---VKPSRTFVNFPVATYDEIHPDVPI 258
            VR  L V+ TD    D     TDRVR+D   +   R   +  V + D +  D+ +
Sbjct: 1219 VRTYLRVISTDRVRTDLHVTSTDRVRTDLRVISTDRVRTDLHVISTDRVRTDLRV 1273


>SB_29437| Best HMM Match : POPLD (HMM E-Value=3.9)
          Length = 356

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 267 IGMNFVVGGNGKVYEGSGWLHVGAHTIGYNRKSIGI-SFVGNYDN-QEATNQQLEAVRSL 440
           I    VVG N K+ + +  + +GA+ I    KS+G  +  G +   Q AT+  ++ V S 
Sbjct: 236 INTQSVVGYNNKLQKATDSMTLGANAINTETKSVGAHNMAGGHPRVQHATDPGIDRVPSR 295

Query: 441 LQ 446
            Q
Sbjct: 296 RQ 297


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,113,465
Number of Sequences: 59808
Number of extensions: 412972
Number of successful extensions: 1044
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)