Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J19
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ...    30   1.2  
At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-conta...    29   2.8  
At5g48890.1 68418.m06048 hypothetical protein                          28   5.0  
At3g45170.1 68416.m04875 zinc finger (GATA type) family protein ...    28   5.0  
At3g27785.1 68416.m03466 myb family transcription factor (MYB118...    27   6.5  
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ...    27   6.5  
At4g32760.1 68417.m04661 VHS domain-containing protein / GAT dom...    27   8.7  

>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
            similar to GI:11993492; RNA binding protein - Homo
            sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
            carboxyl-terminal hydrolases from aa pos. 712
          Length = 1067

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 316  LDGFTSERTRSVTTGNLSGSASSVTTTIKRQRTSNWKL 429
            +D  TS+R+R    GNL+    S TTT+ + +   W+L
Sbjct: 950  VDRRTSKRSRRTNYGNLTSLKVSATTTVYQLKMMIWEL 987


>At1g75310.1 68414.m08748 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q27974
           Auxilin {Bos taurus}; contains Pfam profile PF00226:
           DnaJ domain
          Length = 1448

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 282 RNSSRCPNISNYPYDCLVNFASSPCMLRSSHRSE*RCAGLSPG*SAEANT 133
           R+ S C  +SN  Y  +   +S  C L   H +  R +GL+ G S    T
Sbjct: 243 RDDSTCKTVSNGEYRDVKPPSSFQCTLNGEHGASERLSGLNSGPSERYET 292


>At5g48890.1 68418.m06048 hypothetical protein
          Length = 173

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 296 VATYDEIHPDVPIFQII-HMIVL*TSHRHHAC 204
           VA +  +HPD PIF+     +VL TSH+   C
Sbjct: 106 VACFPTVHPDHPIFKSSGSHVVLATSHQGRDC 137


>At3g45170.1 68416.m04875 zinc finger (GATA type) family protein
           contains GATA-type zinc finger domain,
           INTERPRO:IPR000679
          Length = 204

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 335 SDVKPSRTFVNFPVATYDEIH 273
           +D KPSR F N P AT   +H
Sbjct: 62  NDSKPSRNFSNLPTATRGRLH 82


>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
           contains PFAM profile: PF00249 myb-like DNA binding
           domain
          Length = 437

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 352 TTGNLSGSASSVTTTIKRQRTSNWKL*DHCCSAE*NRVI*LLII 483
           T+G+ SGS S VT  I    T +W +   C     N +  L +I
Sbjct: 389 TSGSASGSGSGVTMEIDEPMTDSWMVMHGCDEVMMNEIALLEMI 432


>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
           subunit-related contains similarity to Swiss-Prot:P80387
           5'-AMP-activated protein kinase, beta-1 subunit (AMPK
           beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
          Length = 591

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 267 IGMNFVVGGNGKVYEGSGWLHVGA-HTIGYNRK 362
           IG +F   GNG+V++G G  ++G+    G+NR+
Sbjct: 22  IGSSFR-SGNGRVFDGRGIAYLGSREKFGFNRR 53


>At4g32760.1 68417.m04661 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 838

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 321 WLHVGAHTIGYNRKSIGISFVGNYDNQEATNQQLEAVRSL 440
           W++ G+ T GY R    +S++     +    +QL+ VR+L
Sbjct: 261 WIYSGSQTRGYGRSGGAVSYI---QTKSGAPRQLDFVRAL 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,216,135
Number of Sequences: 28952
Number of extensions: 284789
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)