Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J18
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    27   1.5  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    26   2.6  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   4.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   5.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   7.8  

>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 102

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 244 PRLLSLVMHLYQYFLGCVSGKLQSSNRNLLFCYILKHSY 360
           P+++S V +L   F GC +G L  ++   L  Y+L + +
Sbjct: 3   PKVVSFVRNLTSSFFGCAAGILGLTSYEGLALYVLGYFF 41


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 266 ITKLKSLGKYYKINHHFSSLTIRLSL*DI 180
           ITK   +   +K+++H S L+ R SL DI
Sbjct: 21  ITKFPFVRNVHKLSYHISPLSSRFSLADI 49


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 13  SDHVVIANPDSFFFQP-LNGPNVNYEAISSGPAFVDF 120
           SD+V +  PD F F P + GP +   A++      D+
Sbjct: 327 SDYVSVRRPDDFSFIPSMQGPFLLQPAVADDELIEDY 363


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 10  HSDHVVIANPDSFFFQPLNGPNVNYEA 90
           H  HV ++NPD     P++  + NY +
Sbjct: 475 HLSHVSLSNPDFAIGSPMSQDSSNYSS 501


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 286  LGCVSGKLQSSNRNLLFCY 342
            LG V+ K  +S  +L+FCY
Sbjct: 1818 LGIVANKQSASQSSLIFCY 1836


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,440
Number of Sequences: 5004
Number of extensions: 30816
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)