Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J18
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-9|AAG24149.1|  330|Caenorhabditis elegans Seven tm rece...    31   0.24 
AL132876-21|CAD21671.1|  418|Caenorhabditis elegans Hypothetical...    28   2.9  
AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm rece...    27   3.9  
Z81546-2|CAB04450.1|  276|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z70754-4|CAA94774.1|  130|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>AF016685-9|AAG24149.1|  330|Caenorhabditis elegans Seven tm
           receptor protein 87 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 238 YFPRLLSLVMH-LYQYFLGCVSGKLQSSNRNLLFCYILKHSYS 363
           YF  +L LV+H +Y+YF+ C +GKL++     L  +++  + S
Sbjct: 101 YFTLILILVLHFIYRYFVVCDAGKLENFKGWYLMLWVVGSTIS 143


>AL132876-21|CAD21671.1|  418|Caenorhabditis elegans Hypothetical
           protein Y105E8A.25 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +1

Query: 4   DGHSDHVVIANPDSFFFQPLNGPNVNYEAISSGPAFVDFNHPN*SP*R*DQPLGRGGK*M 183
           D H     I++PDSF + P++    +Y+ ++   +   +++ N +P     P G      
Sbjct: 120 DHHRIPTDISSPDSFTYPPVS--FTSYDPVNGSGSVPSYSNENTNP-LDSTPRGHSADDR 176

Query: 184 SHNDKRIVNEE 216
            H+D   ++EE
Sbjct: 177 KHSDLPAISEE 187


>AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 85 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 238 YFPRLLSLVMH-LYQYFLGCVSGKLQSSNRNLLFCYI 345
           Y+  +  LV+H +Y+Y + C S KL+  +   L C++
Sbjct: 96  YYTLITLLVVHFIYRYIVICDSAKLKYFDGGYLLCWV 132


>Z81546-2|CAB04450.1|  276|Caenorhabditis elegans Hypothetical
           protein F53A2.2 protein.
          Length = 276

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 269 CITKLKSLGKYYKINHHFSSLTIR 198
           CIT +  L  Y +I H+F S T+R
Sbjct: 120 CITSILLLLAYLEIRHYFRSRTVR 143


>AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical
           protein F59H6.2 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 302 VNYKVQIEICFSV 340
           V YK++IEICFSV
Sbjct: 362 VEYKIRIEICFSV 374


>Z70754-4|CAA94774.1|  130|Caenorhabditis elegans Hypothetical
           protein F58E6.4 protein.
          Length = 130

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 219 MMINLIIFSKTFEFSNAFISIFLGV 293
           M ++L+  ++TFE    FISI LG+
Sbjct: 1   MSVHLLSETETFEMQPIFISILLGI 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,898,093
Number of Sequences: 27780
Number of extensions: 170473
Number of successful extensions: 378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)