Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J18
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42850.1 68416.m04489 galactokinase, putative contains some s...    27   6.3  
At1g60440.1 68414.m06804 eukaryotic pantothenate kinase family p...    26   8.3  

>At3g42850.1 68416.m04489 galactokinase, putative contains some
           similarity to galactokinase [Pasteurella multocida]
           SWISS-PROT:P57899
          Length = 964

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 1   SDGHSDHVVIANPDSFFFQPLNGPNV 78
           S GH  HVV A P+  F   ++ PN+
Sbjct: 40  SSGHRVHVVSAAPEFVFTMEIHSPNL 65


>At1g60440.1 68414.m06804 eukaryotic pantothenate kinase family
           protein similar to pantothenate kinase GI:4191500 from
           [Aspergillus nidulans]; contains Pfam profile PF03630:
           Fumble
          Length = 383

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 272 KCITKLKSLGKYYKINHHFSSLTIRLSL*DIY 177
           K +TK KS  +  +++HH ++  I + + DIY
Sbjct: 189 KLLTKCKSFDELLELSHHGNNRVIDMLVGDIY 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,303,218
Number of Sequences: 28952
Number of extensions: 151751
Number of successful extensions: 244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)