Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J17
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   1.0  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   2.4  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    23   7.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    23   7.2  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    23   7.2  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    23   9.6  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    23   9.6  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    23   9.6  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 261  AGHFVFGCFAADNHVNGMTSFYRAD---SCSDGVRRWYCLNISSV 136
            AG   FG    D  +   TSF   D   +CSD  + W C +  S+
Sbjct: 1104 AGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSI 1148


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 157 VPAPYTITTAVSSVKAGHSIDVVISG 234
           VP+P+  +TA SS +  +S+D+  SG
Sbjct: 184 VPSPFGASTASSSSRRVYSVDLRDSG 209


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 8/41 (19%)
 Frame = -2

Query: 156 CLNISSVPGSVEARARRCSGGVSA--------GKRHHRCNC 58
           CL      GS+ A    CS    A         KRH RC+C
Sbjct: 49  CLTCQKASGSLNAVCYSCSISCHADHDLVDLFNKRHFRCDC 89


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 165 ALHHHYSCQLGKSWSF 212
           +LH   +C+ GKSW +
Sbjct: 501 SLHDSGTCETGKSWMY 516


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 71  WWRLPALTPPEHRLARASTDP 133
           WW LPA+   EHR + +S  P
Sbjct: 275 WW-LPAVASKEHRKSLSSFIP 294


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 153 DSTSALHHHYSCQLGKSWS 209
           D+T  +  +Y C L K+W+
Sbjct: 8   DTTPKIVFYYKCLLNKNWN 26


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 221  WLSAAKHPKT 250
            W SAAKHP T
Sbjct: 1264 WFSAAKHPVT 1273


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 150 NISSVPGSVEARARRCSGG 94
           +ISS P ++EAR R+ + G
Sbjct: 128 SISSSPSTIEARRRKSARG 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,096,977
Number of Sequences: 5004
Number of extensions: 18303
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)