Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J17
         (268 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.45 
SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)                    27   1.8  
SB_20761| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_25621| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_19087| Best HMM Match : Sof1 (HMM E-Value=0.63)                     26   4.2  
SB_36917| Best HMM Match : RinB (HMM E-Value=2.2)                      26   5.5  
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)                    26   5.5  
SB_58365| Best HMM Match : Lectin_C (HMM E-Value=1e-06)                25   7.3  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_36460| Best HMM Match : Lectin_C (HMM E-Value=8e-05)                25   7.3  
SB_39494| Best HMM Match : Cm_res_leader (HMM E-Value=2.8)             25   9.6  
SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  
SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)             25   9.6  

>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 181 TAVSSVKAGHSIDVVISGKTPEDK 252
           T+V  +K G  I+VVIS K PED+
Sbjct: 72  TSVEQMKEGTVIEVVISAKVPEDE 95


>SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)
          Length = 510

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 130 SRHAADVQTVPAPYTITTAVSSVKAGHSI 216
           SRHA  +   P P  + +  SS ++GH I
Sbjct: 432 SRHAGSIPHSPEPSALASQASSFRSGHLI 460


>SB_20761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 48  LRSSSCIGGGAYQRLPHRSTA*RVLRLIPARC*CSDSTSALHHHYSCQ 191
           L+ S  +  G Y+R+P  + A +  R    R     +T  LH H+SC+
Sbjct: 96  LKVSGPVSWGPYRRIPDLTRANQSARFDGYRTPKKINTYYLHAHFSCR 143


>SB_25621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 174 GVRRWYCLNISSVPGSVEARARRC-SGGVSAGKRHHRCNCYYVSD 43
           G+R+ +C+  +S  G V  R R C   G   G +   CN  ++ +
Sbjct: 137 GIRKLHCVKTTSKQGRVYVRDRSCYCIGCITGDKETCCNKEWIDE 181


>SB_19087| Best HMM Match : Sof1 (HMM E-Value=0.63)
          Length = 279

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = -2

Query: 258 GHFVFGCFAADNHVNGMTS-FYRADSCSDGVRRWYCLNISSVPGSVEARARRCSGGVSAG 82
           G +V+  F+   H    +   Y A   S    +WYC N  +V    +    R  GG   G
Sbjct: 1   GPYVYELFSIMIHSGSASGGHYYAYIKSFADNQWYCFNDQNVTQVGDDEIERTFGGSEYG 60

Query: 81  KRHHRCNCY 55
            R +  + Y
Sbjct: 61  PRGYYSSLY 69


>SB_36917| Best HMM Match : RinB (HMM E-Value=2.2)
          Length = 522

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 131 PGTLLMFRQYQRLTPSLQL-SAR*KLVIPLTWLSAAKH 241
           P T L+  +Y RL P  +L   +   V+PLTWL   K+
Sbjct: 351 PLTWLIGGKYVRLLPLTRLFGVKYVRVLPLTWLIGGKY 388



 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 131 PGTLLMFRQYQRLTPSLQL-SAR*KLVIPLTWLSAAKH 241
           P T L+  +Y R+ P  +L   +   V+PLTWL   K+
Sbjct: 379 PLTWLIGGKYVRVLPLTRLYGGKYARVLPLTWLIGGKY 416


>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
          Length = 870

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 3   SLRDDSLKFIER*CHLRSSSCIGGGAYQRLPH 98
           SLR+ S K +++    R    I GG +QRL H
Sbjct: 253 SLREVSEKSVDKSSEHREPGAIKGGWFQRLSH 284


>SB_58365| Best HMM Match : Lectin_C (HMM E-Value=1e-06)
          Length = 441

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 117 RARRCSGGVSAGKRHHRCNCYYVSDIIFL*ISGSRL 10
           R +  SG V +G+ HH    +  SD + L + GSRL
Sbjct: 120 RLQSPSGKVDSGRWHHIVVTWNASDGLKLYLDGSRL 155


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 150  NISSVPGSVEARARRCSGGVSAGKRHHRCNC 58
            ++  VPG      + CSG  +    +H+C C
Sbjct: 1417 SLCEVPGCAGVDGKDCSGHGTCDSANHKCIC 1447


>SB_36460| Best HMM Match : Lectin_C (HMM E-Value=8e-05)
          Length = 452

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 117 RARRCSGGVSAGKRHHRCNCYYVSDIIFL*ISGSRL 10
           R +  SG V +G+ HH    +  SD + L + GSRL
Sbjct: 141 RLQSPSGKVDSGRWHHIVVTWNASDGLKLYLDGSRL 176


>SB_39494| Best HMM Match : Cm_res_leader (HMM E-Value=2.8)
          Length = 159

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 144 SSVPGSVEARARRCSGGVS-AGKRHHRCNCYYVSDI 40
           S VPG++  R RR    +    +R  R N Y ++D+
Sbjct: 121 SGVPGTLSTRRRRTPRTLDLCARRSRRSNYYVLNDV 156


>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
 Frame = +3

Query: 147 CSDSTSA---LHHH-YSCQLGKSWSFH*RGYQRQNTRRQNGR 260
           C+D T     LHH    CQ G  W+F   G       R+ G+
Sbjct: 326 CNDKTEVVLFLHHSALQCQCGSCWAFSSTGSLEGQHFRKTGK 367


>SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)
          Length = 436

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 110 LARASTDPGTLLM--FRQYQRLTPSLQLSAR*KLVIPLT 220
           + RA+ DPGTLL      Y   TPS QL+   +   P T
Sbjct: 95  ICRAARDPGTLLSKPSLPYPGYTPSNQLAGTTRPSAPAT 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,942,133
Number of Sequences: 59808
Number of extensions: 162848
Number of successful extensions: 425
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 65
effective length of database: 12,933,937
effective search space used: 297480551
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)