Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_J17
(268 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 27 1.8
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 27 1.8
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 27 1.8
Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z75543-10|CAA99875.2| 279|Caenorhabditis elegans Hypothetical p... 26 4.2
AY728059-1|AAU43720.1| 279|Caenorhabditis elegans cadmium-induc... 26 4.2
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 25 7.4
U12762-1|AAA62207.1| 558|Caenorhabditis elegans prolyl 4-hydrox... 25 7.4
Z93381-4|CAB07607.2| 382|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical pr... 25 9.7
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 264 DAGHFVFGCFAADNHVNGMTSFYRADSCSDG-VRRWYCLNISS 139
D VF C A+++++NG+ S R + +D +R+ C+++ S
Sbjct: 4000 DCDKSVFACHASNSYINGVASKLRNTNSADAKLRKDDCVSLIS 4042
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -2
Query: 249 VFGCFAADNHVNGMTSFYRADSCSDG-VRRWYCLNISS 139
VF C A+++++NG+ S R + +D +R+ C+++ S
Sbjct: 3997 VFACHASNSYINGVASKLRNTNSADAKLRKDDCVSLIS 4034
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -2
Query: 249 VFGCFAADNHVNGMTSFYRADSCSDG-VRRWYCLNISS 139
VF C A+++++NG+ S R + +D +R+ C+++ S
Sbjct: 4008 VFACHASNSYINGVASKLRNTNSADAKLRKDDCVSLIS 4045
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -2
Query: 249 VFGCFAADNHVNGMTSFYRADSCSDG-VRRWYCLNISS 139
VF C A+++++NG+ S R + +D +R+ C+++ S
Sbjct: 4008 VFACHASNSYINGVASKLRNTNSADAKLRKDDCVSLIS 4045
>Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical
protein T24D1.2 protein.
Length = 464
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 183 CSDGVRRWYCLNISSVPGS 127
C+D VRRWY S+ GS
Sbjct: 396 CTDCVRRWYAARKGSMEGS 414
>Z75543-10|CAA99875.2| 279|Caenorhabditis elegans Hypothetical
protein K01D12.14 protein.
Length = 279
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 267 EDAGHFVFGCFAADNHVNGMTSFYRADSCSDGVRRWYCLNISSVPG 130
ED H C ADNH+ + Y+A D WY + VPG
Sbjct: 127 EDESHATALCRLADNHLLSIIIKYKA--AEDA---WYSALLRGVPG 167
>AY728059-1|AAU43720.1| 279|Caenorhabditis elegans
cadmium-inducible lysosomal proteinCDR-5 protein.
Length = 279
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 267 EDAGHFVFGCFAADNHVNGMTSFYRADSCSDGVRRWYCLNISSVPG 130
ED H C ADNH+ + Y+A D WY + VPG
Sbjct: 127 EDESHATALCRLADNHLLSIIIKYKA--AEDA---WYSALLRGVPG 167
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 189 DSCSDGVRRWYCLNISSVPGSVEARARRCSGGVSAGKRH 73
D C D W+C+ +++ P + RC+ G + K+H
Sbjct: 327 DQCQDWFH-WHCVGLTAEPTDSKWFCTRCTKG-NKSKKH 363
>U12762-1|AAA62207.1| 558|Caenorhabditis elegans prolyl
4-hydroxylase alpha subunit protein.
Length = 558
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 105 CSGGVSAGKRHHRCNCYYVSDIIFL 31
C V +RH R CYY++ FL
Sbjct: 289 CRNEVPVSRRHLRLYCYYLAGPSFL 313
>Z93381-4|CAB07607.2| 382|Caenorhabditis elegans Hypothetical
protein F28G4.4 protein.
Length = 382
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 171 HHHYSCQLGKSW 206
HHHY CQ W
Sbjct: 262 HHHYKCQFLPQW 273
>Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical
protein F56H6.11 protein.
Length = 663
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 170 TPSLQLSAR*KLVIPLTWLSAAKHPKTKWP 259
T SL + + L++P +L A+K K K+P
Sbjct: 136 TWSLSVEVQFYLIVPFIFLMASKFEKLKYP 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,383,123
Number of Sequences: 27780
Number of extensions: 111563
Number of successful extensions: 293
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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