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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J17
         (268 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f...    28   0.74 
At4g03080.1 68417.m00416 kelch repeat-containing serine/threonin...    27   1.3  
At5g52550.1 68418.m06525 expressed protein                             26   3.0  
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro...    26   3.0  
At5g01130.1 68418.m00017 hypothetical protein contains Pfam prof...    25   5.2  
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (...    25   5.2  
At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1) (P...    25   5.2  
At2g33580.1 68415.m04115 protein kinase family protein / peptido...    25   5.2  
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f...    25   5.2  
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ...    25   5.2  
At1g34550.1 68414.m04294 expressed protein contains Pfam profile...    25   5.2  
At5g37470.1 68418.m04509 hypothetical protein contains Pfam PF04...    25   6.9  
At1g72310.1 68414.m08359 zinc finger (C3HC4-type RING finger) fa...    25   6.9  
At5g64816.2 68418.m08154 expressed protein                             25   9.1  
At5g64816.1 68418.m08153 expressed protein                             25   9.1  
At5g52050.1 68418.m06460 MATE efflux protein-related contains Pf...    25   9.1  
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored...    25   9.1  
At5g10080.1 68418.m01168 aspartyl protease family protein contai...    25   9.1  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    25   9.1  

>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 631

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 237 FAADNHVNGMTSFYRADSCSDGVRRWYCLNISSVPGSVEARARRCSGG 94
           F A+  ++G  + Y+ D CSD V+    L I   P  +    +R  GG
Sbjct: 337 FTAEEWLHG-DNMYKCDRCSDYVKACKRLTIRRAPNILTIALKRYQGG 383


>At4g03080.1 68417.m00416 kelch repeat-containing serine/threonine
           phosphoesterase family protein contains Pfam profiles:
           PF00149 calcineurin-like phosphoesterase, PF01344 kelch
           motif
          Length = 881

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 68  RWWRL-PALTPPEHRLARASTDPGTLLMFR 154
           +W RL PA  PP  R A A+   GT+++F+
Sbjct: 85  KWTRLKPAGEPPSPRAAHAAAAVGTMVVFQ 114


>At5g52550.1 68418.m06525 expressed protein
          Length = 360

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = -2

Query: 189 DSCSDGVRRWYCLNISSVPGSVEARARRCSGGVSAGKRHHRCNCYYVSD 43
           + C D  R          P     +    SGG++    H RC+ Y V D
Sbjct: 250 EDCDDSYRNTLNQETGFKPWDYTTKINLFSGGINRFFPHQRCSSYAVHD 298


>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 927

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 153 DSTSALHHHYSCQLGKSWSFH*RGYQRQNT 242
           +S S   H+Y C +    S+  +GY  +NT
Sbjct: 207 ESDSGKTHYYQCHVAPDGSYRLKGYFLENT 236


>At5g01130.1 68418.m00017 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 484

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 150 SDSTSALHHHYSCQ 191
           S S SA+HH Y+CQ
Sbjct: 319 STSKSAIHHFYTCQ 332


>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
           (PRCGA) identical to SP|O24633 Proteasome subunit beta
           type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
           {Arabidopsis thaliana}, cDNA proteasome subunit prcga
           GI:2511571
          Length = 199

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 62  LHRWWRLPALTPPEHRLARASTDPGTLLMFRQYQRLTPSL 181
           LH+      +T   H+L  AS +PG  + F +Y +   SL
Sbjct: 27  LHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKNVSL 66


>At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1)
           (PRGB) identical to GB:CAA74026 from [Arabidopsis
           thaliana] ( FEBS Lett. (1997) 416 (3), 281-285);
           identical to cDNA proteasome subunit prgb GI:2511589
          Length = 204

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 104 HRLARASTDPGTLLMFRQYQRLTPSLQLSAR*KLVIPLTWLSAA 235
           H+L  AS +PG  + F +Y +   SL    + +  IPLT  +AA
Sbjct: 41  HKLVAASGEPGDRVQFTEYVQKNVSLY---KFRNGIPLTTAAAA 81


>At2g33580.1 68415.m04115 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           protein kinase [Arabidopsis thaliana] GI:2852449;
           contains Pfam profiles PF01476: LysM domain, PF00069:
           Protein kinase domain
          Length = 664

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 114 RVLRLIPARC*CSDSTSALHHH 179
           R L +IPA C CS S+   + H
Sbjct: 103 RELVVIPANCSCSSSSGGFYQH 124


>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 672

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 237 FAADNHVNGMTSFYRADSCSDGVRRWYCLNISSVPGSVEARARRCSGG 94
           F A   + G  + Y+ D C D V+    L+I   P  +    +R  GG
Sbjct: 343 FTAKEWLQG-DNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRFQGG 389


>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 382

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 243 GCFAADNHVNGMTSFYRADSCSDGVRRWY 157
           G +  D +VNG+ +   A +  DG R WY
Sbjct: 352 GQYVGDGNVNGVGAGAGAGAGFDGERAWY 380


>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616);
           expression supported by MPSS
          Length = 812

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 6   LRDDSLKFIER*CHLRSSSCIGGGAYQRLP 95
           L +D   +I R CH+  SSCI G + +  P
Sbjct: 459 LTEDDTNYISR-CHIAVSSCIFGNSDRLRP 487


>At5g37470.1 68418.m04509 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 629

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 252 FVFGCFAADNHVNGMTSFYRA--DSCSDGVRRWYCLNISS 139
           F   CF ADN  N +T  +       S+GV R+Y L + S
Sbjct: 43  FALFCFCADNFPNCLTLMFLKLYRHSSNGVIRFYSLYLLS 82


>At1g72310.1 68414.m08359 zinc finger (C3HC4-type RING finger)
           family protein (ATL3) identical to RING-H2 zinc finger
           protein (ATL3) GB:AF132013 (Arabidopsis thaliana)
          Length = 324

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 201 FYRADSCSDGVRRWYCLN 148
           F+R DSC DG+    CL+
Sbjct: 115 FFRQDSCKDGLECSICLS 132


>At5g64816.2 68418.m08154 expressed protein
          Length = 130

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 189 DSCSDGVRRWYCLNISSVPGSVEARARRC 103
           D+CSD   R  C+N   V    +   RRC
Sbjct: 85  DACSDACARTVCVNQHQVANWNDICLRRC 113


>At5g64816.1 68418.m08153 expressed protein
          Length = 130

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 189 DSCSDGVRRWYCLNISSVPGSVEARARRC 103
           D+CSD   R  C+N   V    +   RRC
Sbjct: 85  DACSDACARTVCVNQHQVANWNDICLRRC 113


>At5g52050.1 68418.m06460 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 505

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = -2

Query: 252 FVFGCFAADNHVNGMTSFYRADSCSDGVRRWYCLNISSVPGSV 124
           F++ CF  D            ++C D VR W  L   ++P  +
Sbjct: 233 FLYICFFEDKLSVNEDEKITEETCEDSVREWKKLLCLAIPSCI 275


>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 582

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +3

Query: 147 CSDS-TSALHHHYSCQLGK 200
           C D+ TS  H+H  CQ+GK
Sbjct: 525 CIDTVTSVWHYHGGCQVGK 543


>At5g10080.1 68418.m01168 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 163 APYTITTAVSSVKAGHSIDVVISGKTP 243
           +P  + T     + GH++   I+GKTP
Sbjct: 470 SPNPLPTDEQQSRGGHAVSPAIAGKTP 496


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 103 APPSACFD*SRHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPEDKM 255
           A PS  +  S     + + PAP+  ++  S+   G   D+V    T ED+M
Sbjct: 590 AAPSFSWPGSSQPQQLSSTPAPFPASSPTSASPFGEKKDIV---DTQEDEM 637


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,120,510
Number of Sequences: 28952
Number of extensions: 108090
Number of successful extensions: 269
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 67
effective length of database: 10,130,776
effective search space used: 212746296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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