Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J11
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)             239   1e-63
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_9419| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.76 
SB_12735| Best HMM Match : PT (HMM E-Value=0.36)                       29   2.3  
SB_8303| Best HMM Match : START (HMM E-Value=0.0093)                   29   2.3  
SB_34252| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       29   3.1  
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.1  
SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)         28   5.4  
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)          28   7.1  
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                28   7.1  
SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23)          27   9.4  
SB_23644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_59676| Best HMM Match : VWA (HMM E-Value=8.8e-12)                   27   9.4  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      27   9.4  
SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)              27   9.4  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score =  239 bits (585), Expect = 1e-63
 Identities = 123/153 (80%), Positives = 134/153 (87%)
 Frame = +2

Query: 56  ENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGII 235
           + P Y  FFGVMGA +A++FS+LGAAYGTAKSGTGIAAM+VMRPE IMKSIIPVVMAGII
Sbjct: 5   DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64

Query: 236 AIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTA 415
           AIYGLVVAVLI  S+   S +YTLYK F+ LGAGL+V  SGLAAGFAIGIVGDA VRGTA
Sbjct: 65  AIYGLVVAVLIGSSI---SKDYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTA 121

Query: 416 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 514
           QQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 122 QQPRLFVGMILILIFAEVLGLYGLIVALILTTK 154


>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = +1

Query: 94   GGVCHHLQLPWCCIWHSQVRHRYCRHGGDAA*ADHEIHH----SRCHGGYHCHLRTGRSC 261
            GGVC +    + C+  +    + C    D     +  HH    S  HGGY C   +G + 
Sbjct: 1204 GGVCKNEHGGYSCVCKAGFTGKNCEQDVDECAGVNPCHHGGVCSNSHGGYSCKCASGYTG 1263

Query: 262  PDC 270
             +C
Sbjct: 1264 KNC 1266


>SB_9419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 268 NQDSYDQSVDGNDTRHDNGND 206
           N DS D   +GND+  DNGND
Sbjct: 5   NDDSVDSDTNGNDSVSDNGND 25


>SB_12735| Best HMM Match : PT (HMM E-Value=0.36)
          Length = 1148

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 268 NQDSYDQSVDGNDTRHDNGNDGFHDLLRPHHRHG 167
           N+D+ DQS D +D    +  D  H+L +    HG
Sbjct: 537 NKDAVDQSKDKDDVTQPDDTDDVHELPKDEEDHG 570


>SB_8303| Best HMM Match : START (HMM E-Value=0.0093)
          Length = 522

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 21  TCKYSHIQEKWPKIQSMDLSLELWGRRLPSSSAPLVLHMAQPSQAPVL 164
           T +  H + K  +I+  D SL L  RR+PSSS+     M+ P + P +
Sbjct: 467 TLRKYHCEHKDDEIEEEDSSLSLEKRRMPSSSS----EMSSPDRKPYM 510


>SB_34252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 268 NQDSYDQSVDGNDTRHDNGNDGFHD 194
           N D  D   D ND  HDN +D  H+
Sbjct: 3   NDDDDDNDNDNNDDNHDNNDDNDHN 27


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 477 RPNTSAKMRIRIIPTNNLGCWAVPRTLASPTMPMAKPAARPEKXTARPAPK*MNPL 310
           +P T+ K R    PT +L      +   +PT   AKP     + T RP  K   PL
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKPL 190


>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 329 GAGLAVXFSGLAAGFAIGIVG 391
           GAG+ V F  LA G  +G+VG
Sbjct: 46  GAGMTVGFCNLACGICVGLVG 66


>SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)
          Length = 242

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
 Frame = +1

Query: 199 EIHHSRCHGGYH-----CHLRTGRSCP 264
           E+H SRCH  +H     C LR GRS P
Sbjct: 33  EVHRSRCHSAHHHADWTCSLR-GRSVP 58


>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
          Length = 497

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -1

Query: 277 GTC--NQDSYDQSVDGNDTRHDNGND 206
           G C  N D+ D   DGND   DN ND
Sbjct: 124 GPCCDNDDNNDGDDDGNDDNDDNNND 149


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = -1

Query: 262  DSYDQSVDGNDTRHDNGNDGFHDLLRPHHRHGGNTGA*LGC--AICSTKGAEDDGRRRP 92
            DS   + DGN  R  +G          HHR    TG    C      TK A D  +R+P
Sbjct: 2894 DSVQSNRDGNHDRGTHGERSTDPTSLRHHRKQEQTGMYAKCQKGELPTKLARDTDKRKP 2952


>SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23)
          Length = 396

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 301 VVIAGLV*GTCNQDSYDQSVDGNDTRHDNGNDGFHD 194
           +++ G++ G   +DS     DGN    DN NDG H+
Sbjct: 143 MMVVGIIMG---EDSGQGDYDGNGDDDDNDNDGGHE 175


>SB_23644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 277 GTCNQD-SYDQSVDGNDTRHDNGNDGFHD 194
           G CN+D   D S DGND   D GND   D
Sbjct: 68  GNCNRDDDNDNSGDGNDNSGD-GNDNSGD 95


>SB_59676| Best HMM Match : VWA (HMM E-Value=8.8e-12)
          Length = 678

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 307 QGVVIAG-LV*GTCNQDSY-DQSVDGNDTRHDNGND 206
           QGV + G LV G  + DS  D   DGND   DN ND
Sbjct: 485 QGVTMMGMLVNGDDDDDSKNDGGGDGNDYEVDNSND 520


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +1

Query: 394 CKRTWYGPTAQV--IRRNDPYPHF 459
           C R WYG T  V  + RND   HF
Sbjct: 498 CHREWYGATCDVHCVPRNDSSGHF 521


>SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 546 VAGAPDPIRRESYPISAQSQCAHRD 620
           +A A   + RE+Y  S Q QCA+RD
Sbjct: 891 LAQADISVERETYQKSRQQQCAYRD 915


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +1

Query: 103 CHH-LQLPWCCIWHSQVRHRYCRHGGDAA*A-DHEIH-HSRCHGGYHCHLRTGRSCPD 267
           C+H + +  C  + S  R  +C  G +   + D   H H       HC+ R G SC D
Sbjct: 104 CYHKMDVKPCHNYSSSERAIHCYKGEETVSSQDIPSHNHPSSESAIHCYKRRGNSCQD 161


>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
          Length = 427

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 301 VVIAGLV*GTCNQDSYDQSVDGNDTRHDNGNDGFHD 194
           V++ G+  G C++DS D  +D      D+ +DG  D
Sbjct: 349 VLLNGIDAGVCDKDSDDDGIDDGVCDKDSDDDGVCD 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,131,381
Number of Sequences: 59808
Number of extensions: 573166
Number of successful extensions: 1967
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1941
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)