Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_J11
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 217 7e-57
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 217 7e-57
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 217 7e-57
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 217 7e-57
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 200 5e-52
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 200 5e-52
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 83 2e-16
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 83 2e-16
Z74033-3|CAA98477.1| 407|Caenorhabditis elegans Hypothetical pr... 31 0.51
U29377-2|AAA68713.4| 627|Caenorhabditis elegans Hypothetical pr... 31 0.51
U29377-1|AAZ94294.1| 773|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 29 3.6
U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical p... 29 3.6
U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z71265-3|CAA95835.2| 403|Caenorhabditis elegans Hypothetical pr... 27 8.2
U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical pr... 27 8.2
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 8.2
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 217 bits (529), Expect = 7e-57
Identities = 108/160 (67%), Positives = 123/160 (76%)
Frame = +2
Query: 32 LPHSRKMAENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSII 211
+ + + AE Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPE IMKS+I
Sbjct: 1 MSYDLETAERAAYAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVI 60
Query: 212 PVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVG 391
PV+MAGII IYGLVVA+++ G + S Y L KGF HL AGL GL AG+AIGIVG
Sbjct: 61 PVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVG 120
Query: 392 DASVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 511
DA VRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L T
Sbjct: 121 DAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +2
Query: 317 FIHLGAGLAVXFS--GLAAGFAIGIVGDASVRGTAQQPRLFVGMILILIFAEVLGLYGLI 490
F ++GA A F+ G A G A VG S+ +P L + ++ +I A ++G+YGL+
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMG--VMRPELIMKSVIPVIMAGIIGIYGLV 74
Query: 491 VAIYLYTK 514
VA+ L K
Sbjct: 75 VAMVLKGK 82
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +2
Query: 80 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVA 259
F + A LGA Y G +P + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 260 VLIAGS 277
+++ S
Sbjct: 156 LILGTS 161
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 217 bits (529), Expect = 7e-57
Identities = 108/160 (67%), Positives = 123/160 (76%)
Frame = +2
Query: 32 LPHSRKMAENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSII 211
+ + + AE Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPE IMKS+I
Sbjct: 1 MSYDLETAERAAYAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVI 60
Query: 212 PVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVG 391
PV+MAGII IYGLVVA+++ G + S Y L KGF HL AGL GL AG+AIGIVG
Sbjct: 61 PVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVG 120
Query: 392 DASVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 511
DA VRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L T
Sbjct: 121 DAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +2
Query: 317 FIHLGAGLAVXFS--GLAAGFAIGIVGDASVRGTAQQPRLFVGMILILIFAEVLGLYGLI 490
F ++GA A F+ G A G A VG S+ +P L + ++ +I A ++G+YGL+
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMG--VMRPELIMKSVIPVIMAGIIGIYGLV 74
Query: 491 VAIYLYTK 514
VA+ L K
Sbjct: 75 VAMVLKGK 82
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +2
Query: 80 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVA 259
F + A LGA Y G +P + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 260 VLIAGS 277
+++ S
Sbjct: 156 LILGTS 161
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 217 bits (529), Expect = 7e-57
Identities = 108/160 (67%), Positives = 123/160 (76%)
Frame = +2
Query: 32 LPHSRKMAENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSII 211
+ + + AE Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPE IMKS+I
Sbjct: 1 MSYDLETAERAAYAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVI 60
Query: 212 PVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVG 391
PV+MAGII IYGLVVA+++ G + S Y L KGF HL AGL GL AG+AIGIVG
Sbjct: 61 PVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVG 120
Query: 392 DASVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 511
DA VRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L T
Sbjct: 121 DAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +2
Query: 317 FIHLGAGLAVXFS--GLAAGFAIGIVGDASVRGTAQQPRLFVGMILILIFAEVLGLYGLI 490
F ++GA A F+ G A G A VG S+ +P L + ++ +I A ++G+YGL+
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMG--VMRPELIMKSVIPVIMAGIIGIYGLV 74
Query: 491 VAIYLYTK 514
VA+ L K
Sbjct: 75 VAMVLKGK 82
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +2
Query: 80 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVA 259
F + A LGA Y G +P + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 260 VLIAGS 277
+++ S
Sbjct: 156 LILGTS 161
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 217 bits (529), Expect = 7e-57
Identities = 108/160 (67%), Positives = 123/160 (76%)
Frame = +2
Query: 32 LPHSRKMAENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSII 211
+ + + AE Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPE IMKS+I
Sbjct: 1 MSYDLETAERAAYAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVI 60
Query: 212 PVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVG 391
PV+MAGII IYGLVVA+++ G + S Y L KGF HL AGL GL AG+AIGIVG
Sbjct: 61 PVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVG 120
Query: 392 DASVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 511
DA VRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L T
Sbjct: 121 DAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +2
Query: 317 FIHLGAGLAVXFS--GLAAGFAIGIVGDASVRGTAQQPRLFVGMILILIFAEVLGLYGLI 490
F ++GA A F+ G A G A VG S+ +P L + ++ +I A ++G+YGL+
Sbjct: 17 FGYMGAASAQIFTVLGAAYGTAKSAVGICSMG--VMRPELIMKSVIPVIMAGIIGIYGLV 74
Query: 491 VAIYLYTK 514
VA+ L K
Sbjct: 75 VAMVLKGK 82
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +2
Query: 80 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVA 259
F + A LGA Y G +P + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 260 VLIAGS 277
+++ S
Sbjct: 156 LILGTS 161
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 200 bits (489), Expect = 5e-52
Identities = 94/150 (62%), Positives = 117/150 (78%)
Frame = +2
Query: 56 ENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGII 235
E +YGPFFG +G SA+ F++ G+AYGTAK+GTGIA+MAV RP+ +MK+IIPVVMAGI+
Sbjct: 17 EQAMYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIV 76
Query: 236 AIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTA 415
AIYGLVVAV+++G ++ NYT+ F GL GL AG+AIGI GDA VR +
Sbjct: 77 AIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALS 136
Query: 416 QQPRLFVGMILILIFAEVLGLYGLIVAIYL 505
QQPR+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 137 QQPRMFVGMILILIFAEVLGLYGMIVALIL 166
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 122 LGAAYGTAKSG-TGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIAGS 277
LGA Y +G G+ A++ +P + I+ ++ A ++ +YG++VA+++ +
Sbjct: 118 LGAGYAIGIAGDAGVRALS-QQPRMFVGMILILIFAEVLGLYGMIVALILGAT 169
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 200 bits (489), Expect = 5e-52
Identities = 94/150 (62%), Positives = 117/150 (78%)
Frame = +2
Query: 56 ENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGII 235
E +YGPFFG +G SA+ F++ G+AYGTAK+GTGIA+MAV RP+ +MK+IIPVVMAGI+
Sbjct: 17 EQAMYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIV 76
Query: 236 AIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTA 415
AIYGLVVAV+++G ++ NYT+ F GL GL AG+AIGI GDA VR +
Sbjct: 77 AIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALS 136
Query: 416 QQPRLFVGMILILIFAEVLGLYGLIVAIYL 505
QQPR+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 137 QQPRMFVGMILILIFAEVLGLYGMIVALIL 166
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 122 LGAAYGTAKSG-TGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIAGS 277
LGA Y +G G+ A++ +P + I+ ++ A ++ +YG++VA+++ +
Sbjct: 118 LGAGYAIGIAGDAGVRALS-QQPRMFVGMILILIFAEVLGLYGMIVALILGAT 169
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 82.6 bits (195), Expect = 2e-16
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Frame = +2
Query: 89 MGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLI 268
+G ++ S LGA +G +G+ I V P K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 269 AGSL------DQPSNN-------YTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRG 409
G L D P L G++ G GL V S L G A+GIVG +
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 410 TAQQPRLFVGMILILIFAEVLGLYGLIVAI 499
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 174 DAANPALFVKILIIEIFASAIGLFGMIIGI 203
Score = 41.1 bits (92), Expect = 6e-04
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Frame = +2
Query: 194 IMKSIIPVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFS----GL 361
I+K+ + + + I G + +++G + + L H+ AGL + FS L
Sbjct: 6 ILKTTATLTVITTLIILGTGLFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVL 65
Query: 362 AAGFAIGIVGDASVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 514
AG+ I G + + G + PR+ ++ +IF E + ++G+I+A K
Sbjct: 66 GAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVFVGK 116
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 82.6 bits (195), Expect = 2e-16
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Frame = +2
Query: 89 MGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLI 268
+G ++ S LGA +G +G+ I V P K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 269 AGSL------DQPSNN-------YTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRG 409
G L D P L G++ G GL V S L G A+GIVG +
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 410 TAQQPRLFVGMILILIFAEVLGLYGLIVAI 499
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 174 DAANPALFVKILIIEIFASAIGLFGMIIGI 203
Score = 41.1 bits (92), Expect = 6e-04
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Frame = +2
Query: 194 IMKSIIPVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFS----GL 361
I+K+ + + + I G + +++G + + L H+ AGL + FS L
Sbjct: 6 ILKTTATLTVITTLIILGTGLFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVL 65
Query: 362 AAGFAIGIVGDASVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 514
AG+ I G + + G + PR+ ++ +IF E + ++G+I+A K
Sbjct: 66 GAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVFVGK 116
>Z74033-3|CAA98477.1| 407|Caenorhabditis elegans Hypothetical
protein F38B7.3 protein.
Length = 407
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -1
Query: 277 GTCNQDSYDQSVDGNDTRHDNGNDGF 200
G NQDSYDQ GND +D GN G+
Sbjct: 345 GNANQDSYDQ---GNDYGNDYGNAGY 367
>U29377-2|AAA68713.4| 627|Caenorhabditis elegans Hypothetical
protein K05F1.6b protein.
Length = 627
Score = 31.5 bits (68), Expect = 0.51
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 203 SIIPVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLA 343
S+ V MA + YGLV+A+ DQ + TL+ G+ HL G+A
Sbjct: 342 SVCIVFMATALVYYGLVMALS-----DQSAPGRTLFTGYFHLNNGIA 383
>U29377-1|AAZ94294.1| 773|Caenorhabditis elegans Hypothetical
protein K05F1.6a protein.
Length = 773
Score = 31.5 bits (68), Expect = 0.51
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 203 SIIPVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLA 343
S+ V MA + YGLV+A+ DQ + TL+ G+ HL G+A
Sbjct: 488 SVCIVFMATALVYYGLVMALS-----DQSAPGRTLFTGYFHLNNGIA 529
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 395 HHRRCL--WRNRPLDQRNXRRDQHP 327
H +R + +RN+ DQRN RRD +P
Sbjct: 182 HRQRSISPFRNQQFDQRNSRRDNYP 206
>U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical
protein K06C4.8 protein.
Length = 355
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/31 (32%), Positives = 23/31 (74%)
Frame = +2
Query: 446 LILIFAEVLGLYGLIVAIYLYTKQ*TNLNTL 538
+I++ ++G++G I++IY+Y++ N NT+
Sbjct: 24 MIMLPLILIGIFGNIISIYVYSRHHMNKNTI 54
>U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical
protein F53A9.7 protein.
Length = 85
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 139 HSQVRHRYCRHGGDAA*ADHEIHHS-RCHGGYHCH 240
H + H HGG +E HH HGG+H H
Sbjct: 50 HHEESHHGEHHGGHHGVQHYESHHESHHHGGHHGH 84
>Z71265-3|CAA95835.2| 403|Caenorhabditis elegans Hypothetical
protein M05B5.3 protein.
Length = 403
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 453 RIRIIPTNNLGCWAVPRTLASPTMPM 376
++ +P + +GC +PR L+ P P+
Sbjct: 49 QVNEVPNDEVGCSPIPRPLSQPVQPI 74
>U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical
protein F32A5.2b protein.
Length = 859
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -2
Query: 477 RPNTSAKMRIRIIPTNNLGCWAVPRTLASPTMPMAKPAARPEKXTARP 334
RP T A R+R P L PR T A P +RP T RP
Sbjct: 82 RPATKAPNRMRRPPPRKLA--QTPRPPVVTTQRPAPPQSRPPPVTRRP 127
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -2
Query: 477 RPNTSAKMRIRIIPTNNLGCWAVPRTLASPTMPMAKPAARPEKXTARP 334
RP T A R+R P L PR T A P +RP T RP
Sbjct: 82 RPATKAPNRMRRPPPRKLA--QTPRPPVVTTQRPAPPQSRPPPVTRRP 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,570,411
Number of Sequences: 27780
Number of extensions: 402548
Number of successful extensions: 1094
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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