Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J11
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   274   5e-76
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.60 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.8  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  274 bits (672), Expect = 5e-76
 Identities = 137/153 (89%), Positives = 145/153 (94%)
 Frame = +2

Query: 56  ENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGII 235
           ++PIY PFFGVMGAASAIIFS+LGAAYGTAKSGTGIAAM+VMRPE IMKSIIPVVMAGII
Sbjct: 5   DHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64

Query: 236 AIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTA 415
           AIYGLVVAVLIAG L++P   YTL+KGF+HLGAGLAV FSGLAAGFAIGIVGDA VRGTA
Sbjct: 65  AIYGLVVAVLIAGGLEEP-KGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 416 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 514
           QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 156


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 466 GIGSIRAHRRHLPVHEAVNQPEHT 537
           G+G    + RHLP H  + +P +T
Sbjct: 203 GLGVQNGYGRHLPGHAQMGRPSYT 226



 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 184 PHHRHGGNT 158
           PHH+HG +T
Sbjct: 334 PHHQHGNHT 342


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 428 LFVGMI-LILIFAEVLGLYGLIVAIY 502
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 218 VMAGIIAIYGLVVAVLIAGSLDQ 286
           +++G+I   GL++ VLI GS+ +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISE 433


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 148 LGCAICSTKGAEDDGRRRPHNS 83
           L C + +T+GA+D   R P ++
Sbjct: 308 LHCNMENTEGADDASERNPRSA 329


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 268 NQDSYDQSVDGNDTRHDNGN 209
           NQ++ +Q+ D  +    NGN
Sbjct: 439 NQNANNQNADNQNANKQNGN 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,001
Number of Sequences: 438
Number of extensions: 5196
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)