Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_J11
(625 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38920.1 68417.m05515 vacuolar ATP synthase 16 kDa proteolipi... 202 1e-52
At4g34720.1 68417.m04928 vacuolar ATP synthase 16 kDa proteolipi... 202 1e-52
At2g16510.1 68415.m01893 vacuolar ATP synthase 16 kDa proteolipi... 202 1e-52
At1g75630.1 68414.m08787 vacuolar ATP synthase 16 kDa proteolipi... 202 1e-52
At1g19910.1 68414.m02496 vacuolar ATP synthase 16 kDa proteolipi... 202 1e-52
At4g32530.1 68417.m04631 vacuolar ATP synthase, putative / V-ATP... 92 2e-19
At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C su... 92 2e-19
At4g37030.1 68417.m05245 hypothetical protein 32 0.36
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 31 0.62
At4g36550.1 68417.m05190 U-box domain-containing protein low sim... 29 3.3
At3g01360.1 68416.m00057 expressed protein contains Pfam profile... 28 4.4
At2g31040.1 68415.m03786 ATP synthase protein I -related contain... 28 4.4
At5g66850.1 68418.m08428 protein kinase family protein contains ... 28 5.8
At5g06260.1 68418.m00700 nucleolar protein-related contains weak... 28 5.8
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 28 5.8
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ... 27 7.7
At2g41190.1 68415.m05087 amino acid transporter family protein l... 27 7.7
>At4g38920.1 68417.m05515 vacuolar ATP synthase 16 kDa proteolipid
subunit 3 / V-ATPase 16 kDa proteolipid subunit 3
(AVAP3) (AVA-P3) identical to SP|P59227 Vacuolar ATP
synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 202 bits (494), Expect = 1e-52
Identities = 93/147 (63%), Positives = 120/147 (81%)
Frame = +2
Query: 74 PFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLV 253
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL+
Sbjct: 11 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 70
Query: 254 VAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTAQQPRLF 433
+AV+I+ ++ + +Y L+ G+ HL +GLA +GL+AG AIGIVGDA VR AQQP+LF
Sbjct: 71 IAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 130
Query: 434 VGMILILIFAEVLGLYGLIVAIYLYTK 514
VGMILILIFAE L LYGLIV I L ++
Sbjct: 131 VGMILILIFAEALALYGLIVGIILSSR 157
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 92 GAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIA 271
G A + S G A G G+ A A +P+ + I+ ++ A +A+YGL+V ++++
Sbjct: 98 GLACGLAGLSAGMAIGIV-GDAGVRANA-QQPKLFVGMILILIFAEALALYGLIVGIILS 155
Query: 272 GSLDQ 286
Q
Sbjct: 156 SRAGQ 160
>At4g34720.1 68417.m04928 vacuolar ATP synthase 16 kDa proteolipid
subunit 1 / V-ATPase 16 kDa proteolipid subunit 1
(AVAP1) (AVA-P1) identical to SP|P59227 Vacuolar ATP
synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 202 bits (494), Expect = 1e-52
Identities = 93/147 (63%), Positives = 120/147 (81%)
Frame = +2
Query: 74 PFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLV 253
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL+
Sbjct: 11 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 70
Query: 254 VAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTAQQPRLF 433
+AV+I+ ++ + +Y L+ G+ HL +GLA +GL+AG AIGIVGDA VR AQQP+LF
Sbjct: 71 IAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 130
Query: 434 VGMILILIFAEVLGLYGLIVAIYLYTK 514
VGMILILIFAE L LYGLIV I L ++
Sbjct: 131 VGMILILIFAEALALYGLIVGIILSSR 157
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 92 GAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIA 271
G A + S G A G G+ A A +P+ + I+ ++ A +A+YGL+V ++++
Sbjct: 98 GLACGLAGLSAGMAIGIV-GDAGVRANA-QQPKLFVGMILILIFAEALALYGLIVGIILS 155
Query: 272 GSLDQ 286
Q
Sbjct: 156 SRAGQ 160
>At2g16510.1 68415.m01893 vacuolar ATP synthase 16 kDa proteolipid
subunit 5 / V-ATPase 16 kDa proteolipid subunit 5
(AVAP5) identical to SP|P59227 Vacuolar ATP synthase 16
kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16
kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}
GI:926929; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 202 bits (494), Expect = 1e-52
Identities = 93/147 (63%), Positives = 120/147 (81%)
Frame = +2
Query: 74 PFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLV 253
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL+
Sbjct: 11 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 70
Query: 254 VAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTAQQPRLF 433
+AV+I+ ++ + +Y L+ G+ HL +GLA +GL+AG AIGIVGDA VR AQQP+LF
Sbjct: 71 IAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 130
Query: 434 VGMILILIFAEVLGLYGLIVAIYLYTK 514
VGMILILIFAE L LYGLIV I L ++
Sbjct: 131 VGMILILIFAEALALYGLIVGIILSSR 157
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 92 GAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIA 271
G A + S G A G G+ A A +P+ + I+ ++ A +A+YGL+V ++++
Sbjct: 98 GLACGLAGLSAGMAIGIV-GDAGVRANA-QQPKLFVGMILILIFAEALALYGLIVGIILS 155
Query: 272 GSLDQ 286
Q
Sbjct: 156 SRAGQ 160
>At1g75630.1 68414.m08787 vacuolar ATP synthase 16 kDa proteolipid
subunit 4 / V-ATPase 16 kDa proteolipid subunit 4
(AVAP4) (AVA-P4) identical to SP|P59229 Vacuolar ATP
synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 4) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 166
Score = 202 bits (494), Expect = 1e-52
Identities = 93/147 (63%), Positives = 120/147 (81%)
Frame = +2
Query: 74 PFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLV 253
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL+
Sbjct: 13 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 72
Query: 254 VAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTAQQPRLF 433
+AV+I+ ++ + +Y L+ G+ HL +GLA +GL+AG AIGIVGDA VR AQQP+LF
Sbjct: 73 IAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 132
Query: 434 VGMILILIFAEVLGLYGLIVAIYLYTK 514
VGMILILIFAE L LYGLIV I L ++
Sbjct: 133 VGMILILIFAEALALYGLIVGIILSSR 159
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 92 GAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIA 271
G A + S G A G G+ A A +P+ + I+ ++ A +A+YGL+V ++++
Sbjct: 100 GLACGLAGLSAGMAIGIV-GDAGVRANA-QQPKLFVGMILILIFAEALALYGLIVGIILS 157
Query: 272 GSLDQ 286
Q
Sbjct: 158 SRAGQ 162
>At1g19910.1 68414.m02496 vacuolar ATP synthase 16 kDa proteolipid
subunit 2 / V-ATPase 16 kDa proteolipid subunit 2
(AVAP2) (AVA-P2) identical to SP|Q39039 Vacuolar ATP
synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 2 {Arabidopsis
thaliana}, nearly identical to vacuolar H+-ATPase
proteolipid (16 kDa) subunit GI:755147 from [Gossypium
hirsutum]
Length = 165
Score = 202 bits (494), Expect = 1e-52
Identities = 93/147 (63%), Positives = 120/147 (81%)
Frame = +2
Query: 74 PFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLV 253
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL+
Sbjct: 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 71
Query: 254 VAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTAQQPRLF 433
+AV+I+ ++ + +Y L+ G+ HL +GLA +GL+AG AIGIVGDA VR AQQP+LF
Sbjct: 72 IAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 131
Query: 434 VGMILILIFAEVLGLYGLIVAIYLYTK 514
VGMILILIFAE L LYGLIV I L ++
Sbjct: 132 VGMILILIFAEALALYGLIVGIILSSR 158
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 92 GAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIA 271
G A + S G A G G+ A A +P+ + I+ ++ A +A+YGL+V ++++
Sbjct: 99 GLACGLAGLSAGMAIGIV-GDAGVRANA-QQPKLFVGMILILIFAEALALYGLIVGIILS 156
Query: 272 GSLDQ 286
Q
Sbjct: 157 SRAGQ 161
>At4g32530.1 68417.m04631 vacuolar ATP synthase, putative /
V-ATPase, putative SP|P23968 Vacuolar ATP synthase 22
kDa proteolipid subunit (EC 3.6.3.14) {Saccharomyces
cerevisiae}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 180
Score = 92.3 bits (219), Expect = 2e-19
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 5/147 (3%)
Frame = +2
Query: 80 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVA 259
F +G A +I S LGAA+G +G+ + A+ P K++I V+ +AIYG++VA
Sbjct: 25 FSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAIYGVIVA 84
Query: 260 VLIAGSLDQ-PSNNY----TLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTAQQP 424
+++ L+ PS+ +L G+ +G+ V F+ L G +GI+G + AQ
Sbjct: 85 IILQTKLESVPSSKMYDAESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNS 144
Query: 425 RLFVGMILILIFAEVLGLYGLIVAIYL 505
LFV +++I IF LGL+G+IV I +
Sbjct: 145 TLFVKILVIEIFGSALGLFGVIVGIIM 171
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +2
Query: 317 FIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 496
F +G +++ S L A + I I G + + + PR+ ++ +IF E + +YG+IVA
Sbjct: 25 FSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAIYGVIVA 84
Query: 497 IYLYTK 514
I L TK
Sbjct: 85 IILQTK 90
>At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C
subunit family protein similar to SP|P23968 Vacuolar ATP
synthase 22 kDa proteolipid subunit (EC 3.6.3.14)
{Saccharomyces cerevisiae}; contains Pfam profile
PF00137: ATP synthase subunit C
Length = 178
Score = 92.3 bits (219), Expect = 2e-19
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 5/147 (3%)
Frame = +2
Query: 80 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVA 259
F +G A +I S LGAA+G +G+ + A+ P K++I V+ +AIYG++VA
Sbjct: 23 FSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAIYGVIVA 82
Query: 260 VLIAGSLDQ-PSNNY----TLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTAQQP 424
+++ L+ PS+ +L G+ +G+ V F+ L G +GI+G + AQ
Sbjct: 83 IILQTKLESVPSSKMYDAESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNS 142
Query: 425 RLFVGMILILIFAEVLGLYGLIVAIYL 505
LFV +++I IF LGL+G+IV I +
Sbjct: 143 TLFVKILVIEIFGSALGLFGVIVGIIM 169
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +2
Query: 317 FIHLGAGLAVXFSGLAAGFAIGIVGDASVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA 496
F +G +++ S L A + I I G + + + PR+ ++ +IF E + +YG+IVA
Sbjct: 23 FSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAIYGVIVA 82
Query: 497 IYLYTK 514
I L TK
Sbjct: 83 IILQTK 88
>At4g37030.1 68417.m05245 hypothetical protein
Length = 519
Score = 31.9 bits (69), Expect = 0.36
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 230 IIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVXFSGLAAGFAIGIVGDASVRG 409
I+ I GLV+ + + ++ + Y L KG+ L A A+ G A V +V
Sbjct: 187 IVGILGLVIDIPLFTAIAVIKSPYLLLKGWYRL-AQDAINREGPFLEIACIPVAGLTV-- 243
Query: 410 TAQQPRLFVGMILILIFAEV-LGLYGLIV 493
P + +G IL+ IF+ + +GLYG +V
Sbjct: 244 -LLWPIVVIGFILVTIFSSIFVGLYGAVV 271
>At2g48050.1 68415.m06014 expressed protein ; expression supported
by MPSS
Length = 1500
Score = 31.1 bits (67), Expect = 0.62
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 203 SIIPVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFI 322
S+ P+ + G + + GLV+ S PS ++ +Y GF+
Sbjct: 187 SLSPISVFGFVYLLGLVICTTFPKSSSIPSKSFLIYTGFL 226
>At4g36550.1 68417.m05190 U-box domain-containing protein low
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 577
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 405 RTLASPTMPMAKPAARPEKXTARPAPK 325
RT ASPT + P PE P+PK
Sbjct: 534 RTTASPTSQVVTPVTHPEPVKITPSPK 560
>At3g01360.1 68416.m00057 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 319
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 65 IYGPFFGVMGAASAIIFSSL--GAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIA 238
+ G F V+GA ++ S+L ++ GTA S + +A + P+ + S IPV + +
Sbjct: 8 VAGGGFAVIGAWESLDSSNLDPNSSSGTADSSSPMAQIRASPPKSVGSSSIPVALLSSLF 67
Query: 239 I 241
I
Sbjct: 68 I 68
>At2g31040.1 68415.m03786 ATP synthase protein I -related contains
weaks similarity to Swiss-Prot:P08443 ATP synthase
protein I [Synechococcus sp.]
Length = 350
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 320 IHLGAGLAVXFSGLAA-GFAIGIVGDAS---VRGTAQQPRLFVGMILILIF 460
+ GAGL + + G ++ + D + +G A QPRL V ++L++IF
Sbjct: 241 LSFGAGLLGSLAYMRMLGNSVDAMADGARGVAKGAANQPRLLVPVVLVMIF 291
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 438 PTNNLGCWAVPRTLASPTMPMAKPAARPE-KXTARPAP 328
P N G W T+++PT P P P+ K T P
Sbjct: 171 PRNRNGYWVNIPTMSAPTSPYMSPVPSPQRKSTGHDLP 208
>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
similarity to nucleolar protein C7C (GI:13540302)
[Rattus norvegicus]
Length = 424
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 76 FLWSYGGGVCHHLQLPWCCIWHSQV 150
+ W GG + HH + W ++HS V
Sbjct: 222 YAWHIGGALPHHELVEWKLLYHSSV 246
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 492 SPFTCTRSSK-PT*THSTP-VAGAPDPIRRESYPISAQS 602
SP T S+K P T S+P V+ +P P+R S P+S S
Sbjct: 138 SPTTSPSSAKSPAITPSSPAVSHSPPPVRHSSPPVSHSS 176
>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
arabinogalactan protein [Arabidopsis thaliana]
gi|10880495|gb|AAG24277; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 164
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 408 PRTLASPTMPMAKPAARPEKXTARPAP 328
P +A P MPMA P P + P+P
Sbjct: 78 PMPMAPPPMPMASPPMMPMTPSTSPSP 104
>At2g41190.1 68415.m05087 amino acid transporter family protein low
similarity to vesicular GABA transporter [Rattus
norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 536
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 74 PFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPV--VMAGIIAIYG 247
PFFG+M A + S L A A I R + I+ SII V++G + Y
Sbjct: 467 PFFGLMMALIGSLLSILVAIIMPALCFIKIMGNKATRTQMILSSIIVAIGVVSGTLGTYS 526
Query: 248 LVVAVL 265
V ++
Sbjct: 527 SVAKII 532
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,978
Number of Sequences: 28952
Number of extensions: 389929
Number of successful extensions: 1081
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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