Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J10
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28820.1 68416.m03596 expressed protein  ; expression support...    31   0.42 
At5g23970.1 68418.m02817 transferase family protein similar to  ...    31   0.55 
At2g42480.1 68415.m05255 meprin and TRAF homology domain-contain...    29   2.9  
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff...    28   3.9  
At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containi...    27   9.0  
At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family prot...    27   9.0  
At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive eff...    27   9.0  

>At3g28820.1 68416.m03596 expressed protein  ; expression supported
           by MPSS
          Length = 434

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 19/88 (21%), Positives = 42/88 (47%)
 Frame = +2

Query: 245 SIQKQMNMEKSPESQMAWLTLWTVSTTKFISEAKMEFTRTITLPRKLQT*VSQTLAYGKC 424
           S + + NME   E  M  L       ++ +S+ K +   ++T   + QT +  T+   + 
Sbjct: 345 SAEVKKNMEAYQEQVMKTLEELDTIHSQIVSQTKGKQEGSLTCTPEQQTQIKTTITKWEQ 404

Query: 425 FSAQFMDFSLQHTNLTKNLSYTRTGKLN 508
            + QF++ ++Q    + + + +  GK+N
Sbjct: 405 VTTQFVETAIQSETQSSSTTSSSVGKMN 432


>At5g23970.1 68418.m02817 transferase family protein similar to
           acetyl CoA: benzylalcohol acetyltransferase; BEAT
           [Clarkia breweri][GI:3170250][PMID:9628024],
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034]
          Length = 428

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 366 IVRVNSIFASEINFVVDTVHSVSHAICDSGDFSIFIC 256
           ++ V  IF  +  F V    SVSH ICD+   S F+C
Sbjct: 126 LLHVKVIFFKDKGFAVAV--SVSHKICDAASLSTFVC 160


>At2g42480.1 68415.m05255 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 743

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +1

Query: 22  EMKYLIFVWLFVFAEGGDKKKCDVIVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSL 201
           E KYLI  W  +F  G       V  I++NNY+   +   V NP  L   ++    F  +
Sbjct: 402 ERKYLI--WSPIFISGQCHWFVKVYPIKDNNYDHVSVYLHVANPQSLRPGWKRRAHFSLI 459

Query: 202 SPEVNGKTV 228
               +GK V
Sbjct: 460 LSNQSGKEV 468


>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1065

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 76  KKKCDVIVIRNNNYEKQVLKSDVHNPY 156
           KK  D   +R  NY KQ L  +++ PY
Sbjct: 654 KKILDAPTVRQRNYTKQYLPGEMYGPY 680


>At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1117

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 269 EKSPESQMAWLTLWTV--STTKFISEAKMEFTRTITLPRKLQT*VSQTLAYGKCFSAQFM 442
           +K PE +       TV  ST KF +   +E+ R++T    +   + + +AY +   +   
Sbjct: 378 KKMPEIEQDDAAAETVDSSTVKFGTPEALEYVRSLTDVGAMTRLLHECIAYQRSLDSDLD 437

Query: 443 DFSLQHTNLTKNL 481
               Q T L +NL
Sbjct: 438 TLLSQRTELDRNL 450


>At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00657 Lipase
           Acylhydrolase with GDSL-like motif
          Length = 353

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +1

Query: 157 QLAIDYQTSTIFFS------LSPEVNGKTVLKSAYFNTKTNEYGEIAGITN 291
           +LA D    T+ F+      LSPE +GK +L  A F +  + Y + A + N
Sbjct: 75  KLATDITAETLGFTKYPPAYLSPEASGKNLLIGANFASAASGYDDKAALLN 125


>At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1050

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 16  LLEMKYLIFVWLFVFA--EGGDKKKCDVIVIRNNNYEKQVLKSDVHNPY 156
           LL M+Y +   + +F   E  D K  D   +R  +YEK+ L   ++ PY
Sbjct: 621 LLNMQYRMHPSISIFPNREFYDMKILDAPSVRLRSYEKKFLPEKMYGPY 669


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,210,923
Number of Sequences: 28952
Number of extensions: 250696
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)