Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J09
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   3.7  
06_01_1199 - 10313329-10314858                                         28   5.0  
01_05_0458 + 22432192-22432309,22433980-22434296                       28   6.5  
01_01_0635 - 4795434-4795461,4795897-4797365                           27   8.7  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +1

Query: 298 RLTFFDQLRNERQDDRWSWGYVNSNGSG---QEKIKSTTTARTTNAVIYKSGDSSNTTED 468
           +L F + +   R+D +++    N+  +G    + +   TT +T + + Y    +S     
Sbjct: 472 KLVFRNSITGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMG 531

Query: 469 VNPCSPFIPPPARG 510
             PC  F+P PA G
Sbjct: 532 -EPCRKFVPKPANG 544


>06_01_1199 - 10313329-10314858
          Length = 509

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 370 NGSGQEKIKSTTTARTTNAVIYKSGDSSNTTEDVNPCSPFIPPPAR 507
           NGS    +K+TTT  TTN        + N + +  P SP +P PAR
Sbjct: 287 NGSLHNALKATTTDTTTNDY------NDNNSGEHPPPSPALPWPAR 326


>01_05_0458 + 22432192-22432309,22433980-22434296
          Length = 144

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 382 QEKIKSTTTARTTNAVIYKSGDSSNTTEDVNPCSPFIPPPAR 507
           QEK K+  TA    AV+  S  ++   E V+P  P  PPP R
Sbjct: 51  QEK-KNAQTAAAAAAVVALSSPAAPAAETVDPTPP-TPPPKR 90


>01_01_0635 - 4795434-4795461,4795897-4797365
          Length = 498

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 349 SWGYVNSNGSGQEKIKSTTTARTTNAVIYKSG 444
           +W  +N  G+ ++  +     RTT+AV Y SG
Sbjct: 73  TWAILNRYGARRDSFRGDDRDRTTSAVSYTSG 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,002,619
Number of Sequences: 37544
Number of extensions: 244322
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)