Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J09
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger) fa...    29   3.1  
At5g54062.1 68418.m06725 hypothetical protein                          28   4.1  
At5g60190.1 68418.m07545 Ulp1 protease family protein low simila...    27   7.2  
At4g36630.2 68417.m05198 expressed protein                             27   7.2  
At5g52965.1 68418.m06573 hypothetical protein                          27   9.6  
At3g58240.1 68416.m06493 meprin and TRAF homology domain-contain...    27   9.6  

>At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHA1a
           [Arabidopsis thaliana] GI:3790554; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 176

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 253 CCTVSPKQI-NTDEVHRLTFFDQLRNERQDDRWSWGY 360
           CC V   +  N DE+ RLT    + +    DRW  GY
Sbjct: 104 CCAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMMGY 140


>At5g54062.1 68418.m06725 hypothetical protein
          Length = 207

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 496 PPARGFSAPGRRISEVKCYEFLWNI 570
           P + GFS PG ++   KC+  L NI
Sbjct: 31  PTSAGFSLPGSQVDLAKCWSSLLNI 55


>At5g60190.1 68418.m07545 Ulp1 protease family protein low
           similarity to sentrin/SUMO-specific protease [Homo
           sapiens] GI:6906859; contains Pfam profile PF02902: Ulp1
           protease family, C-terminal catalytic domain
          Length = 226

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 402 RAFNFFLTRSVTVHISPTPSIVLPFVSELIKKCQTMDFV 286
           R   F+L+   TVH S T S++ P ++  I  C   +++
Sbjct: 35  RVIEFYLSFLSTVHSSTTISLIPPSIAFWISNCPDTEYL 73


>At4g36630.2 68417.m05198 expressed protein
          Length = 950

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 484 PFIPPPARGFSAPGRRISEVKCYEFLWNIKVREEESKH 597
           PF+ P  R  S   R  S +K      N++V+EE  KH
Sbjct: 855 PFLAPLLRNSSEAHRNFSVIKSLRQSENLQVKEELYKH 892


>At5g52965.1 68418.m06573 hypothetical protein
          Length = 120

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 493 PPPARGFSAPGRRISEVKCYEFLWNIK 573
           PP   G   PG  I  VKC+  L+N++
Sbjct: 31  PPTVPGLLLPGLPIDLVKCWSSLFNVE 57


>At3g58240.1 68416.m06493 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 317

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 232 FTWFFLTCCTVSPKQINTDE 291
           FTW     C+VSPK I +D+
Sbjct: 9   FTWVIKNFCSVSPKPIYSDQ 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,881,475
Number of Sequences: 28952
Number of extensions: 208165
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)