Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_J07
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 31 0.055
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 27 0.90
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 27 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 2.1
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 2.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 3.6
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 25 4.8
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 4.8
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 24 8.4
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 24 8.4
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 24 8.4
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 24 8.4
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 24 8.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 8.4
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 24 8.4
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 31.5 bits (68), Expect = 0.055
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 138 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPS 314
N V DG + VVI P F+ P+N S N+ P+ P N + + QPS
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL-MAPNASTLNPSSLGASNLSQPS 458
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 0.90
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = -2
Query: 339 TFTFPPPGERVV---VSPGVDNWDD 274
TF+FPPP + V+ + G+D WD+
Sbjct: 270 TFSFPPPSKDVLNSKIELGLDMWDE 294
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 125 NLPWIIIRVMIDHVHSVCGSHGQYGEEEKRESFHCRIVSEL 3
N P II ID + G GQ+G ++RES +++ E+
Sbjct: 387 NAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEM 427
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 2.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 204 SQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIR 305
S P N P P+S PA + P PP + R
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSR 298
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 162 NSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPS 314
+SDH ++ + S S+ PS N + T Y + +Y P + +PS
Sbjct: 29 SSDHFEDSSSNVDESLDSSNPSSNEKASHTNEEYRSKGNQSYVPSSSNEPS 79
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 3.6
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 150 PSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRP 320
P+ GN D+ + P +SQPS P P P+ + P P + Q P
Sbjct: 85 PAVGNQDYSKPSYSQPSYSQPSQPPKEPALPSRGTPSLP--SRPGSRPSVLNQEQVP 139
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +1
Query: 40 FSSSPYWPWLPQTECTWSIITLIIIQGRFTWWTIVVFH 153
F S P+ P T+ W I ++ + +W +FH
Sbjct: 121 FGLSTSVPFPPVTKMIWQITLFFFLEDTWHYWAHRLFH 158
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 4.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 228 GNYEPI--STGPAYVDFNHPNYPPQAIRQPS-RP 320
G+Y P ST P + +P+YPP R S RP
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSARP 150
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 8.4
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 1 DNSDTIRQ*KLSRFSSSPYWPWLPQTECTWSIITL 105
DN DT+ +S S WLP + +TL
Sbjct: 43 DNRDTLSYFNISNLEPSERSEWLPNKRVNAAFVTL 77
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 24.2 bits (50), Expect = 8.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 204 SQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRP 320
++ SN P+GN EP ST A V + + P PS P
Sbjct: 97 ARSSNSPAGNLEP-STNNAGVHMTNASMNPNV--NPSYP 132
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 213 SNGPSGNYEPISTGPAYVDFNHPN 284
++ PSG+ + + P YVD HP+
Sbjct: 507 TSSPSGSKKFVMWNPPYVDPKHPD 530
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/34 (26%), Positives = 14/34 (41%)
Frame = +3
Query: 192 DPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPP 293
+P +PS+ P + P +F YPP
Sbjct: 99 EPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPP 132
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 28 KLSRFSSSPYWPWLPQTECTWSII 99
K SRF +L +TEC W ++
Sbjct: 458 KFSRFRFGGVCNYLAETECVWFLV 481
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.2 bits (50), Expect = 8.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 193 SGFAITTWSLLPSDGTPLL 137
S F + W++LP G P+L
Sbjct: 899 SCFVLRIWNMLPETGVPIL 917
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 24.2 bits (50), Expect = 8.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 173 RCYCEPGSFLLSTIKRS*RKL*THKHWTGVRR 268
+C EP S STI+ HW G+R+
Sbjct: 444 KCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRK 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,454
Number of Sequences: 5004
Number of extensions: 37057
Number of successful extensions: 89
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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